Gene/Protein Characteristic Table for KIAA0883
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Product ID ORK00671
Accession No AB020690
Description paraneoplastic Ma antigen 2
Clone name hk07589
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4253 bp)
Predicted protein sequence (373 aa)
Flexi ORF Clone FXC00671
Source Human adult brain
Rouge ID mKIAA0883 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4253 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2981 bp
Genome contig ID gi51511724r_26318113
PolyA signal sequence
(AATAAA,-28)
+----*----+----*----+----*----+----
ATATGCTAATAAAATCCTGAGTTTTTCTGATTCCT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATATCGTGGTCTCTATAAAGTACTGCTTGAAGAAGGAGCTTTGTTACTGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 8 r 26418113 26422365 1 99.0 Perfect prediction
Features of the protein sequence
Description

Length: 373 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9UL42 4.3e-144 100.0 Paraneoplastic ...
Homo sapiens
AAH36489 1.4e-143 99.7 Paraneoplastic ...
Homo sapiens
XP_528094 3.9e-143 99.2 similar to para...
Pan troglodytes
Q5R486 2.4e-141 98.1 Paraneoplastic ...
Pongo abelii
Q9GMU3 2.2e-140 97.3 Paraneoplastic ...
Macaca fascicularis
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB067521 1.8e-53 46.7 KIAA1934
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR005162 213 288 PF03732 Retrotransposon gag protein
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CATTCATTGGTGGGTTCTAAG
Primer_r CTAACAGTGCCAGCGCCATTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 8
Experimental conditions
Panel name GeneBridge 4
Primer_f CATTCATTGGTGGGTTCTAAG
Primer_r CTAACAGTGCCAGCGCCATTG
PCR product length 142 bp
PCR conditions 95 °C15 sec62 °C60 sec35 cycles
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