# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk07589.fasta.huge -Q ../query/KIAA0883.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0883, 373 aa
 vs ./tmplib.23663 library

1987132 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.2884+/-0.00489; mu= 18.3197+/- 0.334
 mean_var=100.1158+/-23.600, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.128181

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1934  ( 452 res)   fk02059                     ( 452) 1047 203.6 1.8e-53


>>KIAA1934  ( 452 res)   fk02059                          (452 aa)
 initn: 1038 init1: 624 opt: 1047  Z-score: 1051.9  bits: 203.6 E(): 1.8e-53
Smith-Waterman score: 1047;  46.685% identity (76.519% similar) in 362 aa overlap (10-366:5-353)

               10        20        30        40        50        60
KIAA08 SQSGSILRTMALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRL
                :::.::::::. :..: .:.:...::: .  :.:::....  :. :  ::.
KIAA19      KVGAMALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRV
                    10        20        30        40        50     

               70        80        90       100       110       120
KIAA08 LGKIFRKQENANAVLLELLEDTDVSAIPSEVQGKGGVWKVIFKTPNQDTEFLERLNLFLE
       ::..::...::.::..:: . .. ...::.. :::: :.:. :  : : ::: ::: ::.
KIAA19 LGRMFRREDNAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLK
          60        70        80        90       100       110     

              130       140       150       160           170      
KIAA08 KEGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP----MRYRKLRV
        ::.... . ::::       ..:  :  : :... :.  ..: :: :    : ::::.:
KIAA19 DEGRSMTDVARALGC-----CSLPAES--LDAEVMPQV--RSP-PLEPPKESMWYRKLKV
         120       130              140          150       160     

        180       190       200       210       220       230      
KIAA08 FSGSAVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPS
       :::.: :.: ::.:: ::::.:::.  : :.:.::.: : ::::::::..:...::.: :
KIAA19 FSGTASPSPGEETFEDWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDS
         170       180       190       200       210       220     

        240       250       260       270       280       290      
KIAA08 ISVEECLEAFKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPR
       :.::.::.:.::.::. :. :..: :.:.:  . :::::...:::: ::..::.:  .  
KIAA19 ITVEQCLDALKQIFGDKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSV
         230       240       250       260       270       280     

        300       310       320       330       340       350      
KIAA08 RIADQVRLEQVMAGATLNQMLWCRLRELKDQGPPPSFLELMKVIREEEEEEASFENESIE
       : .:..::....: ....  :  .:. : ..: ::.::::::.::.::: : .   :.. 
KIAA19 RSTDMIRLKHLLARVAMTPALRGKLELLDQRGCPPNFLELMKLIRDEEEWENT---EAVM
         290       300       310       320       330          340  

        360        370                                             
KIAA08 EPEER-DGYGRWNHEGDD                                          
       . .:. .: ::                                                 
KIAA19 KNKEKPSGRGRGASGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGS
            350       360       370       380       390       400  




373 residues in 1 query   sequences
1987132 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:01 2008 done: Thu Dec 18 15:20:01 2008
 Total Scan time:  0.390 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]