Gene/Protein Characteristic Table for KIAA0860
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Product ID ORK00663
Accession No AB020667
Description U-box domain containing 5, transcript variant 1
Clone name hk06518
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4313 bp)
Predicted protein sequence (551 aa)
Flexi ORF Clone FXC00663
Source Human adult brain
Rouge ID mKIAA0860 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4313 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2533 bp
Genome contig ID gi51511747r_2936220
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
CCCTAGAAAATGGGAATAAAATTTCTTTTGCTGTC
Flanking genome sequence
(252305 - 252256)
----+----*----+----*----+----*----+----*----+----*
CCCAGAGTTAATTCTGCCTCCTGGTACCATTTCAGTATTCTATGTGCTGT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 20 r 3019818 3088524 9 98.6 Terminal No-hit
Features of the protein sequence
Description

Length: 551 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O94941 0 100.0 RING finger pro...
Homo sapiens
BAD96596 0 99.8 ubiquitin conju...
Homo sapiens
XP_001160362 0 99.4 U-box domain co...
Pan troglodytes
XP_001115116 0 97.8 U-box domain co...
Macaca mulatta
XP_542922 1.7e-201 89.6 similar to RING...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003613 268 348 PF04564 U box
HMMSmart IPR003613 272 341 SM00504 U box
ProfileScan IPR001841 493 538 PS50089 Zinc finger
ScanRegExp IPR001841 514 523 PS00518 Zinc finger
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TTCCCTTCTAAGCACGTTTGG
Primer_r GTATTGGGTGTGGACTAGAGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 20
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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