Gene/Protein Characteristic Table for KIAA0987
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Product ID ORK01141
Accession No AB023204
Description erythrocyte membrane protein band 4.1-like 3, transcript variant 1
Clone name hk01713
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4446 bp)
Predicted protein sequence (1115 aa)
Flexi ORF Clone FXC01141
Source Human adult brain
Rouge ID mKIAA0987 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4446 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1096 bp
Genome contig ID gi51511735r_5282388
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TTCTGCATAGCGAAATAAAAATGGCAAATGCACTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAGCTCTAAGTTTGTATGTTTAATAATTTCAGTATTGTATGTGTTTAGT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 18 r 5382388 5533986 23 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1115 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9Y2J2 0 100.0 Band 4.1-like p...
Homo sapiens
CAH92695 0 98.8 hypothetical pr...
Pongo abelii
XP_512036 0 98.9 erythrocyte mem...
Pan troglodytes
XP_870774 0 89.2 similar to Band...
Bos taurus
XP_001914904 0 90.6 similar to Band...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB002336 5.5e-82 43.2 KIAA0338
AB018336 1.4e-31 35.7 KIAA0793
AB046768 6.8e-15 39.8 KIAA1548
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR000798 151 170 PR00661 Ezrin/radixin/moesin ERM
IPR000299 171 183 PR00935 Band 4.1
IPR000798 201 220 PR00661 Ezrin/radixin/moesin ERM
IPR000299 235 248 PR00935 Band 4.1
IPR000798 244 265 PR00661 Ezrin/radixin/moesin ERM
IPR000299 248 268 PR00935 Band 4.1
IPR000299 309 325 PR00935 Band 4.1
IPR000798 332 352 PR00661 Ezrin/radixin/moesin ERM
HMMPfam IPR000299 140 329 PF00373 Band 4.1
IPR014847 423 471 PF08736 FERM adjacent (FA)
IPR007477 726 793 PF04382 SAB
IPR008379 995 1108 PF05902 Band 4.1
HMMSmart IPR000299 134 329 SM00295 Band 4.1
ProfileScan IPR000299 138 419 PS50057 Band 4.1
ScanRegExp IPR000299 192 220 PS00660 Band 4.1
IPR000299 299 328 PS00661 Band 4.1

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 664 FLFIFFFLLSASFSVPYALTLSF 686 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GAGCCAAGCCTTAAACTGTAC
Primer_r ATGCAGGTGATCGTGTAATGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 18
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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