hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18462020/chunk_1/iprscan-20080502-18462020.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0987 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00373.8.fs FERM domain (Band 4.1 family) 358.7 6.9e-112 1 PF00373.8.ls FERM domain (Band 4.1 family) 360.5 2.5e-105 1 PF05902.3.ls 4.1 protein C-terminal domain (CTD) 260.5 3.2e-75 1 PF05902.3.fs 4.1 protein C-terminal domain (CTD) 258.5 7e-75 1 PF04382.3.fs SAB domain 147.7 7.2e-42 1 PF04382.3.ls SAB domain 149.7 7.4e-42 1 PF08736.1.fs FERM adjacent (FA) 84.6 2.6e-23 1 PF08736.1.ls FERM adjacent (FA) 86.5 7.3e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00373.8.fs 1/1 140 329 .. 1 210 [] 358.7 6.9e-112 PF00373.8.ls 1/1 140 329 .. 1 210 [] 360.5 2.5e-105 PF08736.1.ls 1/1 423 471 .. 1 50 [] 86.5 7.3e-23 PF08736.1.fs 1/1 423 471 .. 1 50 [] 84.6 2.6e-23 PF04382.3.ls 1/1 726 793 .. 1 72 [] 149.7 7.4e-42 PF04382.3.fs 1/1 726 793 .. 1 72 [] 147.7 7.2e-42 PF05902.3.fs 1/1 995 1108 .. 1 114 [] 258.5 7e-75 PF05902.3.ls 1/1 995 1108 .. 1 114 [] 260.5 3.2e-75 Alignments of top-scoring domains: PF00373.8.fs: domain 1 of 1, from 140 to 329: score 358.7, E = 6.9e-112 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd c+v llD+ +++ veK + GqvL+dkV++hL+l+EkdYFGL y D KIAA0987 140 CKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRD- 185 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT +++WLdp+K+i+kQ ++ +++ F+vKFYp+D p++L ++iT KIAA0987 186 ---AENQKNWLDPAKEIKKQ--VRSGAWHFSFNVKFYPPD-PAQLSEDIT 229 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC ry+++LQ+++dI++GrlpC+f t++LL+SY+VQse+GDY++ + +++ KIAA0987 230 RYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGSD--- 276 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk Y s ++++P n ++++E+k+ elHk+HrGm+p+eAe+ +L+ KIAA0987 277 --YISEFRFAP----N--H--TKELEDKVIELHKSHRGMTPAEAEMHFLE 316 iArdLemYGVdff<-* +A++L+mYGVd++ KIAA0987 317 NAKKLSMYGVDLH 329 PF00373.8.ls: domain 1 of 1, from 140 to 329: score 360.5, E = 2.5e-105 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd c+v llD+ +++ veK + GqvL+dkV++hL+l+EkdYFGL y D KIAA0987 140 CKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRD- 185 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT +++WLdp+K+i+kQ ++ +++ F+vKFYp+D p++L ++iT KIAA0987 186 ---AENQKNWLDPAKEIKKQ--VRSGAWHFSFNVKFYPPD-PAQLSEDIT 229 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC ry+++LQ+++dI++GrlpC+f t++LL+SY+VQse+GDY++ + +++ KIAA0987 230 RYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGSD--- 276 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk Y s ++++P n ++++E+k+ elHk+HrGm+p+eAe+ +L+ KIAA0987 277 --YISEFRFAP----N--H--TKELEDKVIELHKSHRGMTPAEAEMHFLE 316 iArdLemYGVdff<-* +A++L+mYGVd++ KIAA0987 317 NAKKLSMYGVDLH 329 PF08736.1.ls: domain 1 of 1, from 423 to 471: score 86.5, E = 7.3e-23 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p++kF+ +lGSkFRYSGRTq+Qt++as+ i+R++p FeRs+Skry++ KIAA0987 423 PPKKFL-TLGSKFRYSGRTQAQTRRASALIDRPAPYFERSSSKRYTM 468 rrs<-* +rs KIAA0987 469 SRS 471 PF08736.1.fs: domain 1 of 1, from 423 to 471: score 84.6, E = 2.6e-23 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p++kF+ +lGSkFRYSGRTq+Qt++as+ i+R++p FeRs+Skry++ KIAA0987 423 PPKKFL-TLGSKFRYSGRTQAQTRRASALIDRPAPYFERSSSKRYTM 468 rrs<-* +rs KIAA0987 469 SRS 471 PF04382.3.ls: domain 1 of 1, from 726 to 793: score 149.7, E = 7.4e-42 *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE ++++e++++es+++++++Lk++eL+KtQD+l+KHq++IsELKRtF+E KIAA0987 726 AADGETTATESDQEEDAELKAQELEKTQDDLMKHQTNISELKRTFLE 772 snStpeprpnEWEREKRLsThSPvr<-* + St+++++nEWE KRLsT SPvr KIAA0987 773 T-STDTAVTNEWE--KRLST-SPVR 793 PF04382.3.fs: domain 1 of 1, from 726 to 793: score 147.7, E = 7.2e-42 *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE ++++e++++es+++++++Lk++eL+KtQD+l+KHq++IsELKRtF+E KIAA0987 726 AADGETTATESDQEEDAELKAQELEKTQDDLMKHQTNISELKRTFLE 772 snStpeprpnEWEREKRLsThSPvr<-* + St+++++nEWE KRLsT SPvr KIAA0987 773 T-STDTAVTNEWE--KRLST-SPVR 793 PF05902.3.fs: domain 1 of 1, from 995 to 1108: score 258.5, E = 7e-75 *->keeistksVpivnrevkTiTYesaqvDdgadldpGvLltaqtiTsEt k eistk+Vp+v++e+kTiTYes+qvD+g+dl+pGvL++aqtiTsEt KIAA0987 995 KLEISTKEVPVVHTETKTITYESSQVDPGTDLEPGVLMSAQTITSET 1041 lSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAkeq +SttTTThiTKTvkgGisETriEkrivItgD+DiDhDqaLaqAIkEAkeq KIAA0987 1042 TSTTTTTHITKTVKGGISETRIEKRIVITGDADIDHDQALAQAIKEAKEQ 1091 hPDMsVtKvvVhqeTei<-* hPDMsVtKvvVh+eTei KIAA0987 1092 HPDMSVTKVVVHKETEI 1108 PF05902.3.ls: domain 1 of 1, from 995 to 1108: score 260.5, E = 3.2e-75 *->keeistksVpivnrevkTiTYesaqvDdgadldpGvLltaqtiTsEt k eistk+Vp+v++e+kTiTYes+qvD+g+dl+pGvL++aqtiTsEt KIAA0987 995 KLEISTKEVPVVHTETKTITYESSQVDPGTDLEPGVLMSAQTITSET 1041 lSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAkeq +SttTTThiTKTvkgGisETriEkrivItgD+DiDhDqaLaqAIkEAkeq KIAA0987 1042 TSTTTTTHITKTVKGGISETRIEKRIVITGDADIDHDQALAQAIKEAKEQ 1091 hPDMsVtKvvVhqeTei<-* hPDMsVtKvvVh+eTei KIAA0987 1092 HPDMSVTKVVVHKETEI 1108 //