Gene/Protein Characteristic Table for KIAA1055
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Product ID ORK03292
Accession No AB028978
Description TBC1 domain family, member 2B
Clone name hh09512
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5876 bp)
Predicted protein sequence (868 aa)
Flexi ORF Clone FXC03292
Source Human adult brain
Rouge ID mKIAA1055 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5876 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3268 bp
Genome contig ID gi51511731r_75974383
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ACTAAAGGAAGAAATAAACTACTAATTTGTATAAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTCTGCATTGAAATTCAGTTATAGTCACTGGTGATGGGGCTCACCCCAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 r 76074383 76156912 13 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 868 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
NP_055894 0 100.0 TBC1 domain fam...
Homo sapiens
Q9UPU7 0 100.0 TBC1 domain fam...
Homo sapiens
XP_510522 0 99.8 TBC1 domain fam...
Pan troglodytes
XP_001106607 0 97.8 similar to TBC1...
Macaca mulatta
EAW99190 0 100.0 TBC1 domain fam...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB020689 1.5e-15 34.0 KIAA0882
AB014576 5.3e-14 32.5 KIAA0676
AB029031 2.1e-10 25.8 KIAA1108
AB011175 2.1e-09 21.4 KIAA0603
D13644 5.8e-09 24.1 KIAA0019
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000195 613 832 PF00566 RabGAP/TBC
HMMSmart IPR000195 613 833 SM00164 RabGAP/TBC
ProfileScan IPR001849 1 93 PS50003 Pleckstrin-like
IPR000195 616 810 PS50086 RabGAP/TBC

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 777 DYTLITFNWFLVVFVDSVVSDIL 799 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AATGTTTCACTGGGTAGACGG
Primer_r ACACTTGATTCGAGCAGACTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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