hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16072146/chunk_1/iprscan-20080501-16072146.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1055 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00566.9.ls TBC domain 189.0 1.1e-53 1 PF00566.9.fs TBC domain 187.1 3.9e-53 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00566.9.fs 1/1 613 832 .. 1 219 [] 187.1 3.9e-53 PF00566.9.ls 1/1 613 832 .. 1 219 [] 189.0 1.1e-53 Alignments of top-scoring domains: PF00566.9.fs: domain 1 of 1, from 613 to 832: score 187.1, E = 3.9e-53 *->vkeGvpsstrakVWavcsgAyqlrY...AsageYerllrrgdekesq ++ G p r kVW c ++++++ +g + ll++ ek KIAA1055 613 IRAGIPHEHRSKVWKWCVDRHTRKFkdnTEPGHFQTLLQKALEKQNP 659 avdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQG a +Ie D+ RtL+ + + egi+kLr+vL A+sw+nPd+gYcQG KIAA1055 660 ASKQIELDLLRTLPNNKHYSCP-TSEGIQKLRNVLLAFSWRNPDIGYCQG 708 MNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLd N ++A Ll e+AF++L ++e +P Yy+++l G+ Dq+v+ KIAA1055 709 LNRLVAVALLYL-EQEDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFR 757 sfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLF + e+lprL + ++ vd + + wfL ++ ++ ++ ++I+D + KIAA1055 758 DLMSEKLPRLHGHFEQYKVDYTLITFNWFLVVFVDSVVSDILFKIWDSFL 807 adGivllfrvaLAvLkilkeqiLda<-* +G + fr aLA k e+iL KIAA1055 808 YEGPKVIFRFALALFKYKEEEILKL 832 PF00566.9.ls: domain 1 of 1, from 613 to 832: score 189.0, E = 1.1e-53 *->vkeGvpsstrakVWavcsgAyqlrY...AsageYerllrrgdekesq ++ G p r kVW c ++++++ +g + ll++ ek KIAA1055 613 IRAGIPHEHRSKVWKWCVDRHTRKFkdnTEPGHFQTLLQKALEKQNP 659 avdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQG a +Ie D+ RtL+ + + egi+kLr+vL A+sw+nPd+gYcQG KIAA1055 660 ASKQIELDLLRTLPNNKHYSCP-TSEGIQKLRNVLLAFSWRNPDIGYCQG 708 MNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLd N ++A Ll e+AF++L ++e +P Yy+++l G+ Dq+v+ KIAA1055 709 LNRLVAVALLYL-EQEDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFR 757 sfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLF + e+lprL + ++ vd + + wfL ++ ++ ++ ++I+D + KIAA1055 758 DLMSEKLPRLHGHFEQYKVDYTLITFNWFLVVFVDSVVSDILFKIWDSFL 807 adGivllfrvaLAvLkilkeqiLda<-* +G + fr aLA k e+iL KIAA1055 808 YEGPKVIFRFALALFKYKEEEILKL 832 //