Gene/Protein Characteristic Table for KIAA0007
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Product ID ORK00362
Accession No D26488
Description WD repeat domain 43
Clone name ha02056
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (3500 bp)
Predicted protein sequence (686 aa)
Flexi ORF Clone FXC00362
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0007 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 3500 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1437 bp
Genome contig ID gi89161199f_28871040
PolyA signal sequence
Flanking genome sequence
(153550 - 153599)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 2 f 28971040 29024588 18 99.5 Perfect prediction
Features of the protein sequence

Length: 686 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_515377 0 99.7 WD repeat domai...
Pan troglodytes
Q15061 0 100.0 WD repeat-conta...
Homo sapiens
XP_001092386 0 98.7 WD repeat domai...
Macaca mulatta
XP_532920 0 92.3 similar to WD-r...
Canis lupus fam...
XP_583609 0 91.5 WD repeat domai...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001680 28 51 PF00400 WD40 repeat
IPR001680 125 163 PF00400 WD40 repeat
IPR001680 167 203 PF00400 WD40 repeat
IPR012979 499 585 PF08162 Protein of unknown function NUC189
HMMSmart IPR001680 15 51 SM00320 WD40 repeat
IPR001680 54 119 SM00320 WD40 repeat
IPR001680 122 163 SM00320 WD40 repeat
IPR001680 166 203 SM00320 WD40 repeat
IPR001680 206 259 SM00320 WD40 repeat
ProfileScan IPR001680 131 166 PS50082 WD40 repeat
IPR001680 131 268 PS50294 WD40 repeat

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 2
Experimental conditions
Panel name Genebridge 4
PCR product length 240 bp
PCR conditions 95 °C15 sec58 °C60 sec30 cycles
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