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Gene/Protein Characteristic Table for FLJ00040

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Product ID	ORK04111
Accession No	AK054561
Clone name	as00040
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4435 bp) Predicted protein sequence (1060 aa)
Source	Human spleen
Rouge ID	mFLJ00040 by Kazusa Mouse cDNA Project

Length: 4435 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1060 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002110	539	551	PR01415	Ankyrin
	IPR002110	832	844	PR01415	Ankyrin
HMMPfam	IPR003123	274	377	PF02204	Vacuolar sorting protein 9
	IPR002110	472	504	PF00023	Ankyrin
	IPR002110	505	537	PF00023	Ankyrin
	IPR002110	538	570	PF00023	Ankyrin
	IPR002110	574	606	PF00023	Ankyrin
	IPR002110	753	785	PF00023	Ankyrin
	IPR002110	786	818	PF00023	Ankyrin
	IPR002110	819	851	PF00023	Ankyrin
	IPR002110	852	884	PF00023	Ankyrin
HMMSmart	IPR003123	271	389	SM00167	Vacuolar sorting protein 9
	IPR002110	472	501	SM00248	Ankyrin
	IPR002110	505	534	SM00248	Ankyrin
	IPR002110	538	568	SM00248	Ankyrin
	IPR002110	574	603	SM00248	Ankyrin
	IPR002110	753	782	SM00248	Ankyrin
	IPR002110	786	815	SM00248	Ankyrin
	IPR002110	819	848	SM00248	Ankyrin
	IPR002110	852	881	SM00248	Ankyrin
ProfileScan	IPR002110	472	504	PS50088	Ankyrin
	IPR002110	472	918	PS50297	Ankyrin
	IPR002110	505	537	PS50088	Ankyrin
	IPR002110	538	559	PS50088	Ankyrin
	IPR002110	574	606	PS50088	Ankyrin
	NULL	637	668	PS50324	NULL
	IPR002110	753	785	PS50088	Ankyrin
	IPR002110	786	818	PS50088	Ankyrin
	IPR002110	819	851	PS50088	Ankyrin
	IPR002110	852	884	PS50088	Ankyrin

Experimental conditions

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