Gene/Protein Characteristic Table for KIAA1334
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Product ID ORK00805
Accession No AB037755
Description retinoic acid induced 14, transcript variant 1
Clone name fh15842
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5043 bp)
Predicted protein sequence (989 aa)
Flexi ORF Clone FXC00805
Source Human fetal brain
Rouge ID mKIAA1334 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5043 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1846 bp
Genome contig ID gi51511721f_34592353
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
AAGTTATTGGAGAAAATAAACTTGTTTCATTTTGC
Flanking genome sequence
(276122 - 276171)
----+----*----+----*----+----*----+----*----+----*
ATTTCTGGTGTTGATTTTTGGTGTATTCAGAAGCATATCTGCGTGGCTTC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 5 f 34692353 34868473 18 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 989 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAH52988 0 100.0 Retinoic acid i...
Homo sapiens
Q9P0K7 0 99.9 Ankycorbin; Ank...
Homo sapiens
AAF44722 0 99.7 novel retinal p...
Homo sapiens
XP_001151811 0 99.6 retinoic acid i...
Pan troglodytes
XP_001089076 0 98.7 similar to reti...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB046781 2.3e-22 27.2 KIAA1561
AB075861 4.5e-17 29.0 KIAA1981
AB028997 1.7e-06 21.6 KIAA1074
AB095935 7.6e-06 21.0 KIAA2015
AB033049 2.2e-05 25.5 KIAA1223
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR002110 62 74 PR01415 Ankyrin
IPR002110 173 185 PR01415 Ankyrin
HMMPfam IPR002110 27 60 PF00023 Ankyrin
IPR002110 61 93 PF00023 Ankyrin
IPR002110 94 126 PF00023 Ankyrin
IPR002110 127 159 PF00023 Ankyrin
IPR002110 160 192 PF00023 Ankyrin
IPR002110 193 225 PF00023 Ankyrin
IPR002110 226 261 PF00023 Ankyrin
HMMSmart IPR002110 61 90 SM00248 Ankyrin
IPR002110 94 126 SM00248 Ankyrin
IPR002110 127 156 SM00248 Ankyrin
IPR002110 160 189 SM00248 Ankyrin
IPR002110 193 222 SM00248 Ankyrin
IPR002110 226 256 SM00248 Ankyrin
ProfileScan IPR002110 27 249 PS50297 Ankyrin
IPR002110 61 93 PS50088 Ankyrin
IPR002110 94 126 PS50088 Ankyrin
IPR002110 127 159 PS50088 Ankyrin
IPR002110 160 192 PS50088 Ankyrin
IPR002110 193 225 PS50088 Ankyrin
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GTGACAGCCCAAGATACTACC
Primer_r GAGCCGCTGCATAATGTAAAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 5
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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