Gene/Protein Characteristic Table for KIAA1972
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Product ID ORK00963
Accession No AB075852
Description ring finger and SPRY domain containing 1, transcript variant 1
Clone name fk09334
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3473 bp)
Predicted protein sequence (576 aa)
Flexi ORF Clone FXC00963
Source Human fetal brain
Rouge ID mKIAA1972 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 3473 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1499 bp
Genome contig ID gi51511732f_55677755
PolyA signal sequence
Flanking genome sequence
(154134 - 154183)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 16 f 55777755 55831887 15 99.5 Perfect prediction
Features of the protein sequence

Length: 576 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q5R881 0 99.8 RING finger and...
Pongo abelii
BAG51341 0 99.8 unnamed protein...
Homo sapiens
Q95LP3 0 99.1 RING finger and...
Macaca fascicularis
XP_850920 0 97.2 similar to F16A...
Canis lupus fam...
AAI34576 0 96.9 RSPRY1 protein ...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003877 358 482 PF00622 SPla/RYanodine receptor SPRY
HMMSmart IPR003877 358 482 SM00449 SPla/RYanodine receptor SPRY
IPR001841 527 561 SM00184 Zinc finger
ProfileScan IPR001870 300 483 PS50188 B302
IPR001841 527 562 PS50089 Zinc finger

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 16
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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