Gene/Protein Characteristic Table for KIAA1888
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Product ID ORK04007
Accession No AB067475
Description ATP-binding cassette, sub-family A (ABC1), member 5
Clone name fk02242
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3112 bp)
Predicted protein sequence (737 aa)
Source Human fetal brain
Rouge ID mKIAA1888 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3112 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 897 bp
Genome contig ID gi51511734r_64654387
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
CTTGAATAAAATATTTTATTGGGTAAAAAAAAAAT
Flanking genome sequence
(227358 - 227309)
----+----*----+----*----+----*----+----*----+----*
AGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 r 64754386 64781744 20 99.6 Terminal No-hit
Features of the protein sequence
Description

Length: 737 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q8WWZ7 0 99.9 ATP-binding cas...
Homo sapiens
CAB93535 0 99.6 ATP-binding cas...
Homo sapiens
AAK30022 0 99.7 ATP-binding cas...
Homo sapiens
BAB71208 0 99.3 unnamed protein...
Homo sapiens
XP_511650 0 98.6 ATP-binding cas...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB020629 1.5e-82 41.9 KIAA0822
AB028985 1.1e-38 28.9 KIAA1062
AB040953 2.1e-05 22.4 KIAA1520
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR003439 528 570 PD000006 ABC transporter related
HMMPfam IPR003439 421 604 PF00005 ABC transporter related
HMMSmart IPR003593 420 607 SM00382 AAA+ ATPase
ProfileScan IPR003439 385 628 PS50893 ABC transporter related

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 62 VFAAVFNSTMVYSLPILVNIISN 84 SECONDARY 23
2 113 KIELYFQAALLGIIVTAMPPYFA 135 PRIMARY 23
3 163 GQAVVDIPLFFIILILMLGSLLA 185 PRIMARY 23
4 198 LAVVFCLIGYVPSVILFTYIASF 220 PRIMARY 23
5 232 WSFIYSVAALACIAITEITFFMG 254 PRIMARY 23
6 262 HYAFCIIIPIYPLLGCLISFIKI 284 PRIMARY 23
7 302 LSVAVISPYLQCVLWIFLLQ 321 SECONDARY 20
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CAGAGACAAGTGAAGATGATG
Primer_r CAAGTGCATGTGTTATTCGAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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