hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15395587/chunk_1/iprscan-20080502-15395587.nocrc
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Query sequence: KIAA1888
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  28.9    0.00069   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1     420   607 ..     1    92 []    28.9  0.00069

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 420 to 607: score 28.9, E = 0.00069
                   *->pgevvllvGppGsGKTTlaralarllgp...gviyidge........
                      +ge+++l Gp+G+GK+T+++ l + ++p+++ v++ d +++ +++++
    KIAA1888   420    KGEILGLLGPNGAGKSTIINILVGDIEPtsgQVFLGDYSsetseddd 466  

                   ..................................................
                   + +  +   + +    +   +++ +  +  ++ + ++ ++  ++  +  +
    KIAA1888   467 slkcmgycpqinplwpdttlqehfeiygavkgmsasdmkevisrithald 516  

                   ....ggqrirlalalark............dvlllDEitslld.......
                    +++  + ++++ a ++++     +  +++ + llDE+ +  d + +++ 
    KIAA1888   517 lkehLQKTVKKLPAGIKRklcfalsmlgnpQITLLDEPSTGMDpkakqhm 566  

                   ............vtviattndldpallrrrfdrrivl.lril<-*
                    +  +   +++++  i+tt+  ++ + + + +  i+++++ +   
    KIAA1888   567 wrairtafknrkRAAILTTH-YMEEAEAVCDRVAIMVsGQLR    607  

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