Gene/Protein Characteristic Table for KIAA1885
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Product ID ORK00295
Accession No AB067472
Description valyl-tRNA synthetase 2, mitochondrial, transcript variant 2
Clone name fj04812
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4070 bp)
Predicted protein sequence (1098 aa)
Flexi ORF Clone FXC00295
Source Human fetal brain
Rouge ID mKIAA1885 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4070 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 246 bp
Genome contig ID gi89161210f_30889961
PolyA signal sequence
(GATAAA,-19)
+----*----+----*----+----*----+----
GGAATGAGGAGATTGAGATAAACTTTTGAAATCCC
Flanking genome sequence
(112253 - 112302)
----+----*----+----*----+----*----+----*----+----*
AAACATGTCTGTTTATGGCTCTTTGGTCCCCTTTGCTCCCAGTGGTGACT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 f 30989961 31002212 29 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 1098 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92716 0 98.8 VARS2L protein ...
Homo sapiens
BAG65557 0 99.4 unnamed protein...
Homo sapiens
Q5ST30 0 100.0 Valyl-tRNA synt...
Homo sapiens
CAI18004 0 99.9 valyl-tRNA synt...
Homo sapiens
EAX03348 0 99.8 valyl-tRNA synt...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR002303 174 185 PR00986 Valyl-tRNA synthetase
IPR002303 386 403 PR00986 Valyl-tRNA synthetase
IPR002303 502 515 PR00986 Valyl-tRNA synthetase
IPR002303 614 635 PR00986 Valyl-tRNA synthetase
IPR002303 645 663 PR00986 Valyl-tRNA synthetase
HMMPfam IPR002300 147 770 PF00133 Aminoacyl-tRNA synthetase
IPR013155 814 967 PF08264 Valyl/Leucyl/Isoleucyl-tRNA synthetase
HMMTigr IPR002303 135 1074 TIGR00422 Valyl-tRNA synthetase
ScanRegExp IPR001412 181 192 PS00178 Aminoacyl-tRNA synthetase
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TCTTCGCTTTATCCTCAATGC
Primer_r GAGGTTGTGAAGCCAGAAGTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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