hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15331336/chunk_1/iprscan-20080502-15331336.nocrc
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Query sequence: KIAA1885
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00422 valS: valyl-tRNA synthetase                    967.3   1.9e-288   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00422   1/1     135  1074 ..     1   970 []   967.3 1.9e-288

Alignments of top-scoring domains:
TIGR00422: domain 1 of 1, from 135 to 1074: score 967.3, E = 1.9e-288
                   *->mpkdYdPkevEkklYdkWeksgfFkpd.....gnsnkkvepkrfciv
                      +p++Y P  vE+ +Y +W  +gfFkp+ + + + +++  e   f++ 
    KIAA1885   135    LPPAYSPRYVEAAWYPWWVREGFFKPEyqarlPQATG--ET--FSMC 177  

                   iPPPNVTGsLHiGHAlnwslqDilaRYKRMkGynvLwlpGtDHAGIATQv
                   iPPPNVTGsLHiGHAl++++qD l+R +RM+G+ vLw pG DHAGIATQ+
    KIAA1885   178 IPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDQVLWVPGSDHAGIATQA 227  

                   kVEkklkaeeikgKtkhDlgREeFvekiweWKeesggtIknQikrLGvSl
                   +VEk+l++e   g  +h l+RE+F++++w+WKe  gg I +Q++ LG+Sl
    KIAA1885   228 VVEKQLWKER--GVRRHELSREAFLREVWQWKEAKGGEICEQLRALGASL 275  

                   DWsRErFTmdegLskaVkeaFvrLYekGLIYRGeyLVNWdPklnTAISdi
                   DW+RE FTmd g s aV eaFvrLY+ GL YR   LVNW+ +l++AISdi
    KIAA1885   276 DWDRECFTMDVGSSVAVTEAFVRLYKAGLLYRNHQLVNWSCALRSAISDI 325  

                   EVEnKEyke...RvkgkLyYirYpLan.....gsktadGk.d.yLvVATT
                   EV   E+++ ++ ++  L++   p+ ++   + + ++dG++d ++vV TT
    KIAA1885   326 EV---ENRPlpgHTQLRLPGCPTPVSFgllfsVAFPVDGEpDaEVVVGTT 372  

                   RPETmfGDtAvaVHPeDERYYkhLiGKkVilPLtgrkIPiiaDeyVDmEF
                   RPET++GD+AvaVHP+D RY +hL+G   ++PL g+  P+i+D +V +  
    KIAA1885   373 RPETLPGDVAVAVHPDDSRY-THLHGRQLRHPLMGQPLPLITDYAVQPHV 421  

                   GTGaVKvTPAHDfNDyevgkRHnLLefinildedGlLNEnAevidTGked
                   GTGaVKvTPAH + D e+g RH L +  n++ edG+++  +         
    KIAA1885   422 GTGAVKVTPAHSPADAEMGARHGL-SPLNVIAEDGTMTSLC--------- 461  

                   vYaIPgey.qGLerfeARkKiVedLkeeGlLvKiephthnVGhceRsgtv
                        g++ qGL rf AR+Ki   L e Gl  +   h +  + c+Rsg+v
    KIAA1885   462 -----GDWlQGLHRFVAREKIMSVLSEWGLFRGLQNHPMVLPICSRSGDV 506  

                   vEPlLskQWFVkvekLadkaleaaeedGeikFvPkrfekrYlnWlrnirW
                   +E lL+ QWFV+ ++    a++a+e  G +++ P+   k+  +W + i  
    KIAA1885   507 IEYLLKNQWFVRCQEMGARAAKAVE-SGALELSPSFHQKNWQHWFSHIG- 554  

                   DWCISRQLiWGHrIPVWYveiEgeedhketGe...vyVakeealpdskt.
                   DWC SRQL+WGH+IP++ v       ++  Ge++  +V+++ea++++ + 
    KIAA1885   555 DWCVSRQLWWGHQIPAYLVVE-----DHAQGEedcWVVGRSEAEAREVAa 599  

                   ....ntgpkevcdkCGsvFeleQDeDVLDTWFSSsLWPFStlGWPqEkGd
                   + ++++g+           +le+D+DVLDTWFSS+L PFS lGWP    +
    KIAA1885   600 eltgRPGA--------EL-TLERDPDVLDTWFSSALFPFSALGWP----Q 636  

                   etekDlkkfYPtdlLvTGyDIIFFWVaRMIlrslalTGDENGKPqvPFkd
                   et  Dl++fYP +lL+TG D + FWV RM++ +  lTG      q+PF+ 
    KIAA1885   637 ET-PDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTG------QLPFSK 679  

                   VyIhGLVRDEqGrKMSKSlGNVIDPlDvIeGIsLddLleKrtgnmlqPql
                   V++h++VRD qGrKMSKSlGNV DP D+I G+ +  L eK+  ++l+P +
    KIAA1885   680 VLLHPMVRDRQGRKMSKSLGNVLDPRDIISGVEMQVLQEKLRSGNLDPAE 729  

                   aeKikkgtkksfpnGIpkYGaDALRftLaslvtGpGdDinfdwkrvesar
                      ++ ++kk+fp GIp++G+DALRftL+s  + +  D+ ++  +v s r
    KIAA1885   730 LAIVAAAQKKDFPHGIPECGTDALRFTLCSHGV-QAGDLHLSVSEVQSCR 778  

                   nFaNKlWNAsRFvLmnlsddtqdelelsggeeklslaDrWILskLnrtik
                    F+NK+WNA RF+L  l+++  ++++  +   ++s++D WILs+L  + +
    KIAA1885   779 HFCNKIWNALRFILNALGEKFVPQPA--EELSPSSPMDAWILSRLALAAQ 826  

                   evreaLDkYrFneAakalYeFiW.ndFCDwYIElvKyrlyngndeaekka
                   e +  +  +++ +++ al  F W +  CD+Y+E+vK++l+      +   
    KIAA1885   827 ECERGFLTRELSLVTHALHHF-WlHNLCDVYLEAVKPVLWHSP---RPLG 872  

                   ArdtLayVLdkalrLLHPfmPFitEeiwQhlkege....adSimlqsyPe
                     ++L +  d  lrLL+P+mPF++Ee+wQ+l+ + + ++a Si +++yP 
    KIAA1885   873 PPQVLFSCADLGLRLLAPLMPFLAEELWQRLPPRPgcppAPSISVAPYPS 922  

                   v..daefvDeeaekafellkeiIvsiRnlkaesnippnaplkvllkyeea
                   + + +    +e+e+ f  + e++  +R l+a +++ +  p  vll+++e 
    KIAA1885   923 AcsLEHWRQPELERRFSRVQEVVQVLRALRATYQLTKARP-RVLLQSSEP 971  

                   eetaerlkanasdvkrlinfeevkvvsekpei.vteavaevvpgfeviiP
                         ++a+++ + +l   + v +++   + + + a a + ++++v+  
    KIAA1885   972 -GDQGLFEAFLEPLGTLGYCGAVGLLPPGAAApSGWAQAPLSDTAQVYME 1020 

                   vkglinkakelarlqKqldkkekkEveriekkLeNegFvkkAPkeviekE
                   + gl++  + l+ l+  +  k++k   ++ +++ +eg   +   +++ + 
    KIAA1885  1021 LQGLVDPQIQLPLLAARRY-KLQKQLDSLTARTPSEGEAGTQRQQKLSSL 1069 

                   kekle<-*
                    + l    
    KIAA1885  1070 QLELS    1074 

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