Gene/Protein Characteristic Table for KIAA1676
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Product ID ORK04691
Accession No AB051463
Description tet methylcytosine dioxygenase 1
Clone name fh07095
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4834 bp)
Predicted protein sequence (735 aa)
Source Human fetal brain
Rouge ID mKIAA1676 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4834 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 2626 bp
Genome contig ID gi89161187f_69976696
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
AGGAAATAAATTTGTTTGAAATGACATTTTCTCTC
Flanking genome sequence
(147550 - 147599)
----+----*----+----*----+----*----+----*----+----*
ATAAAACTGGTCATCTAACATTATTTCTACCCCTCTATTATGTTTTACTG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 10 f 70076696 70124244 10 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 735 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q8NFU7 0 100.0 Protein TET1; T...
Homo sapiens
AAM88301 0 100.0 leukemia-associ...
Homo sapiens
EAW54299 0 100.0 CXXC finger 6 [...
Homo sapiens
XP_507822 0 99.5 CXXC finger 6 [...
Pan troglodytes
XP_536371 0 89.0 similar to CXXC...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB046766 6.9e-20 35.0 KIAA1546
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
None - - - - -

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 105 TGHHCPTAVMVVLIMVWDGIPLP 127 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TGACGCTTGTTGCAGTTTACC
Primer_r AAATCACAGGGCAGAGAATGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 10
Experimental conditions
Panel name GeneBridge 4
Primer_f TTAATACGGAAATCGCTGTGG
Primer_r TAACCTCCAAATCGGCTTCTC
PCR product length 169 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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