# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh07095.fasta.huge -Q ../query/KIAA1676.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1676, 735 aa vs ./tmplib.25089 library 1986770 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.9648+/-0.00772; mu= 3.0991+/- 0.524 mean_var=295.6568+/-73.103, 0's: 0 Z-trim: 2 B-trim: 40 in 2/38 Lambda= 0.074590 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1546 ( 684 res) fh12289 ( 684) 741 93.6 6.9e-20 >>KIAA1546 ( 684 res) fh12289 (684 aa) initn: 1171 init1: 662 opt: 741 Z-score: 448.9 bits: 93.6 E(): 6.9e-20 Smith-Waterman score: 1050; 34.985% identity (57.289% similar) in 686 aa overlap (208-735:1-684) 180 190 200 210 220 230 KIAA16 CSWSMYFNGCKFGRSPSPRRFRIDPSSPLHEKNLEDNLQSLATRLAPIYKQYAPVAYQNQ :..::..::.:.: .:: ::. :: ::.:: KIAA15 EEKLESHLQNLSTLMAPTYKKLAPDAYNNQ 10 20 30 240 250 260 270 280 290 KIAA16 VEYENVARECRLGSKEGRPFSGVTACLDFCAHPHRDIHNMNNGSTVVCTLTREDNRSLGV .:::. : ::::: :::::::::::::::::: :::.:::.::::.:::::::::: .: KIAA15 IEYEHRAPECRLGLKEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGG 40 50 60 70 80 90 300 310 320 330 340 350 KIAA16 IPQDEQLHVLPLYKLSDTDEFGSKEGMEAKIKSGAIEVLAPRRKKRTCFTQPVPRSGKKR :.:::::::::::.::.::::: :..: : .::::.::. :.: ...:: .. ..: KIAA15 KPEDEQLHVLPLYKVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLAEPV-KTCRQR 100 110 120 130 140 360 370 380 390 400 KIAA16 AAMMTEVLAHKIRAVEKKPIPRIKRKNNSTTT----NNSKPSSLPTL----G---SNTET .. :.:. ..:.. :.:. . : : :. ..: : : .... KIAA15 KLEAKKAAAEKLSSLENSSNKNEKEKSAPSRTKQTENASQAKQLAELLRLSGPVMQQSQQ 150 160 170 180 190 200 410 420 430 440 450 KIAA16 VQPEVKSETEPHFILK---------SSDNTKTYSLMPSA------PHPVKEASPGFSWSP :: :. .:. . .......:: :. :.::. . : KIAA15 PQPLQKQPPQPQQQQRPQQQQPHHPQTESVNSYSASGSTNPYMRRPNPVSPYPNSSHTSD 210 220 230 240 250 260 460 470 480 490 500 KIAA16 KTASATPAPLKNDATASCGFSERSSTP----------HCTMPSGRLSGANAAAADGPGIS .:..: . . .. . : ::.: . .:: . .: .. .: .. KIAA15 IYGSTSPMNFYSTSSQAAGSYLNSSNPMNPYPGLLNQNTQYPSYQCNGNLSVDNCSPYLG 270 280 290 300 310 320 510 520 530 KIAA16 QLG-EVAPLPTLSAPVMEPL-------INS--EPSTGVTEPLT----------------- . . . :. : ..:: :.. .: : .. .: KIAA15 SYSPQSQPMDLYRYPSQDPLSKLSLPPIHTLYQPRFGNSQSFTSKYLGYGNQNMQGDGFS 330 340 350 360 370 380 540 550 560 570 KIAA16 --------------PHQPNHQPS--FL--TS--PQDLASSPME--EDEQHSEAD--EPPS : :.:. . :. :: : .:.. :. . :.:: . . : KIAA15 SCTIRPNVHHVGKLPPYPTHEMDGHFMGATSRLPPNLSNPNMDYKNGEHHSPSHIIHNYS 390 400 410 420 430 440 580 KIAA16 DEP--------------LSDDPLS----------PA---------------------EEK : .: :: :: .:: KIAA15 AAPGMFNSSLHALHLQNKENDMLSHTANGLSKMLPALNHDRTACVQGGLHKLSDANGQEK 450 460 470 480 490 500 590 600 610 620 630 KIAA16 LPHI------------DEYWSDSEHIFLDANIGGVAIAPAHGSVLIECARRELHATTPVE : :: :::::. ::: .:::::.::.:::.:::::.::::::::.. KIAA15 QPLALVQGVASGAEDNDEVWSDSEQSFLDPDIGGVAVAPTHGSILIECAKRELHATTPLK 510 520 530 540 550 560 640 650 660 670 680 KIAA16 HPNRNHPTRLSLVFYQHKNLNKPQHGFELNKIKFEAKEAKNKK------------MKASE .::::::::.::::::::..:.:.::. : . :. :..:..:. .:. KIAA15 NPNRNHPTRISLVFYQHKSMNEPKHGLALWEAKM-AEKAREKEEECEKYGPDYVPQKSHG 570 580 590 600 610 620 690 700 710 720 730 KIAA16 QKDQAANEGPEQSSEVNELNQIPS--HKALTLTHDNVVTVSPYALTHVAGPYNHWV .: . :...:: . : : : ......: :..::.::::.:.:.::::... KIAA15 KKVKREPAEPHETSEPTYLRFIKSLAERTMSVTTDSTVTTSPYAFTRVTGPYNRYI 630 640 650 660 670 680 735 residues in 1 query sequences 1986770 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:12:32 2008 done: Thu Dec 18 15:12:32 2008 Total Scan time: 0.560 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]