Gene/Protein Characteristic Table for KIAA1672
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Product ID ORK04856
Accession No AB051459
Description EF-hand calcium binding domain 6
Clone name hj02515
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5168 bp)
Predicted protein sequence (395 aa)
Source Human adult brain
Rouge ID mKIAA1672 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5168 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Features of the protein sequence
Description

Length: 395 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW73310 4.5e-164 100.0 hCG17297, isofo...
Homo sapiens
EAW73309 3e-148 100.0 hCG17297, isofo...
Homo sapiens
EAW73308 3.1e-148 100.0 hCG17297, isofo...
Homo sapiens
CAQ10020 4.3e-148 100.0 EF-hand calcium...
Homo sapiens
Q5THR3 4.7e-148 100.0 EF-hand calcium...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR002048 33 56 PF00036 Calcium-binding EF-hand
IPR002048 219 247 PF00036 Calcium-binding EF-hand
IPR002048 326 354 PF00036 Calcium-binding EF-hand
HMMSmart IPR002048 33 61 SM00054 Calcium-binding EF-hand
IPR002048 219 247 SM00054 Calcium-binding EF-hand
IPR002048 326 354 SM00054 Calcium-binding EF-hand
ProfileScan IPR002048 29 64 PS50222 Calcium-binding EF-hand
IPR002048 110 145 PS50222 Calcium-binding EF-hand
IPR002048 215 250 PS50222 Calcium-binding EF-hand
IPR002048 322 357 PS50222 Calcium-binding EF-hand
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 22
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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