Gene/Protein Characteristic Table for KIAA1394
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Product ID ORK00824
Accession No AB037815
Description carnosine synthase 1
Clone name hj07546
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5065 bp)
Predicted protein sequence (1003 aa)
Flexi ORF Clone FXC00824
Source Human adult brain
Rouge ID mKIAA1394 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5065 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1004 bp
Genome contig ID gi51511727f_66840243
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
GCATCCCTCCCCAAATAAAGGCTTATGTACTGGTG
Flanking genome sequence
(109411 - 109460)
----+----*----+----*----+----*----+----*----+----*
AAGTGTCTAGATAGGTTCTCTTGACTGGACAACTCCTCCCAGGATCAGCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 11 f 66940243 66949652 8 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1003 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
NP_065862 0 100.0 ATP-grasp domai...
Homo sapiens
A5YM72 0 99.9 ATP-grasp domai...
Homo sapiens
EDL33027 0 83.0 mCG3875 [Mus mu...
Mus musculus
XP_001378878 0 75.6 similar to hCG2...
Monodelphis dom...
Q6ZPS2 0 84.0 ATP-grasp domai...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003806 677 873 PF02655 ATP-grasp fold
ProfileScan IPR011761 692 896 PS50975 ATP-grasp fold
ScanRegExp IPR005479 863 870 PS00867 Carbamoyl-phosphate synthase L chain

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 881 ELYGVDLLLAAVMVACGLRPALP 903 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GCTCCAGGATTATACCACAGT
Primer_r TCTGCCAATGCTAGTTAGGTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 11
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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