hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01355698/chunk_1/iprscan-20080502-01355698.nocrc
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Query sequence: KIAA1394
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF02655.5.ls ATP-grasp domain                            -33.6     0.0019   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF02655.5.ls   1/1     677   873 ..     1   190 []   -33.6   0.0019

Alignments of top-scoring domains:
PF02655.5.ls: domain 1 of 1, from 677 to 873: score -33.6, E = 0.0019
                   *->asDKlktykaLknargvpvPeTyliitkleaeeleeen.........
                      a  K +t   L  ++g+p P        l a ++ ++ ++ + ++  
    KIAA1394   677    AKQKSLTQLHLLHHHGPPWP-----APSLHAVPCCPLEseadverav 718  

                   ...ekkyivKPrdGaGgegvrfvengeedeefieelenPd..........
                   ++ + + + K  +GaG+ gvr+ve+ ++ +e +  + +  +++ ++++ +
    KIAA1394   719 hqvPLPGVMKLEFGAGAVGVRLVEDAPQCHEHFSRITRDLqgeadhpgig 768  

                   .......iiQeFIeGeplSV.sllsdgekalpLsvNrQlIdnagleeegs
                    + ++  +  eF+eG+++ V+++l++g   ++L+    ++  +g+ ++++
    KIAA1394   769 lgwgnamLLMEFVEGTEHDVdLVLFGG---RLLA---AFVSDNGPTRLPG 812  

                   NaeqtdVsgfvYaGnltPsetelEvkeeleelAeevveaLpGLr.GyvGV
                            f  +    P    +E    +++ A + ++   GL++G + V
    KIAA1394   813 ---------FTETAACMPTGLAPEQEAQMVQAAFRCCLGC-GLLdGVFNV 852  

                   DlvCltdrlggPYViEVNPRiTts<-*
                    l  lt+   gP  iE+NPR ++    
    KIAA1394   853 ELK-LTG--AGPRLIEINPRMGGF    873  

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