Gene/Protein Characteristic Table for KIAA1387
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Product ID ORK00820
Accession No AB037808
Description protein phosphatase 4, regulatory subunit 3B, transcript variant 1
Clone name fj06480
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4385 bp)
Predicted protein sequence (950 aa)
Flexi ORF Clone FXC00820
Source Human fetal brain
Rouge ID mKIAA1387 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4385 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1532 bp
Genome contig ID gi89161199r_55529019
PolyA signal sequence
(ATTAAA,-24)
+----*----+----*----+----*----+----
AAAATTCAGGAATTAAAATGTGACCCTGTAATTCC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATAATTGATGTTTGTGTTTGGTTTGTTGTAAATATAAATTAACTCCATTT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 2 r 55629019 55698227 17 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 950 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
NP_001116436 0 99.9 SMEK homolog 2,...
Homo sapiens
XP_001112386 0 91.8 similar to fala...
Macaca mulatta
BAG59121 0 99.4 unnamed protein...
Homo sapiens
XP_531833 2e-211 92.6 similar to CG93...
Canis lupus fam...
XP_001496215 4.4e-186 87.5 SMEK homolog 2,...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB095930 4.1e-140 71.8 KIAA2010
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR006887 267 460 PF04802 Protein of unknown function DUF625
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TTGTCAACCGCCTACCAGTAC
Primer_r GCACTATTCTTGGTTGGTCTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 2
Experimental conditions
Panel name GeneBridge 4
Primer_f TTGTCAACCGCCTACCAGTAC
Primer_r GCACTATTCTTGGTTGGTCTG
PCR product length 134 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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