hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23562486/chunk_1/iprscan-20080501-23562486.nocrc
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Query sequence: KIAA1334
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 188.7    1.3e-53   7
PF00023.20.fs Ankyrin repeat                                 176.1    8.3e-50   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.ls   1/7      27    60 ..     1    33 []     3.2      9.9
PF00023.20.fs   1/7      32    60 ..     6    33 .]     2.6       10
PF00023.20.ls   2/7      61    93 ..     1    33 []    36.3    1e-07
PF00023.20.fs   2/7      61    93 ..     1    33 []    34.3  1.4e-08
PF00023.20.ls   3/7      94   126 ..     1    33 []    23.3  0.00082
PF00023.20.fs   3/7      94   126 ..     1    33 []    21.3    6e-05
PF00023.20.ls   4/7     127   159 ..     1    33 []    30.3  6.5e-06
PF00023.20.fs   4/7     127   159 ..     1    33 []    28.3  6.8e-07
PF00023.20.ls   5/7     160   192 ..     1    33 []    45.9  1.3e-10
PF00023.20.fs   5/7     160   192 ..     1    33 []    43.9  2.9e-11
PF00023.20.fs   6/7     193   225 ..     1    33 []    39.1  6.3e-10
PF00023.20.ls   6/7     193   225 ..     1    33 []    41.1  3.5e-09
PF00023.20.fs   7/7     226   261 ..     1    33 []     6.7      0.7
PF00023.20.ls   7/7     226   261 ..     1    33 []     8.7      1.6

Alignments of top-scoring domains:
PF00023.20.ls: domain 1 of 7, from 27 to 60: score 3.2, E = 9.9
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                        +  L  A+++g++e v  Ll+++GA+   +d    
    KIAA1334    27    KNDDRLLQAVENGDAEKVASLLGkKGASATKHDS    60   

PF00023.20.fs: domain 1 of 7, from 32 to 60: score 2.6, E = 10
                   *->LHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      L  A+++g++e v  Ll+++GA+   +d    
    KIAA1334    32    LLQAVENGDAEKVASLLGkKGASATKHDS    60   

PF00023.20.ls: domain 2 of 7, from 61 to 93: score 36.3, E = 1e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G T+ HlAa +g++e+++  + +G d+ aqd    
    KIAA1334    61    EGKTAFHLAAAKGHVECLRVMITHGVDVTAQDT    93   

PF00023.20.fs: domain 2 of 7, from 61 to 93: score 34.3, E = 1.4e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G T+ HlAa +g++e+++  + +G d+ aqd    
    KIAA1334    61    EGKTAFHLAAAKGHVECLRVMITHGVDVTAQDT    93   

PF00023.20.ls: domain 3 of 7, from 94 to 126: score 23.3, E = 0.00082
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G ++LHlAa++ ++e+++ Ll+  +    +d    
    KIAA1334    94    TGHSALHLAAKNSHHECIRKLLQSKCPAESVDS    126  

PF00023.20.fs: domain 3 of 7, from 94 to 126: score 21.3, E = 6e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G ++LHlAa++ ++e+++ Ll+  +    +d    
    KIAA1334    94    TGHSALHLAAKNSHHECIRKLLQSKCPAESVDS    126  

PF00023.20.ls: domain 4 of 7, from 127 to 159: score 30.3, E = 6.5e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G T+LH+Aa  g+l+ v+ L ++   +n++d    
    KIAA1334   127    SGKTALHYAAAQGCLQAVQILCEHKSPINLKDL    159  

PF00023.20.fs: domain 4 of 7, from 127 to 159: score 28.3, E = 6.8e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G T+LH+Aa  g+l+ v+ L ++   +n++d    
    KIAA1334   127    SGKTALHYAAAQGCLQAVQILCEHKSPINLKDL    159  

PF00023.20.ls: domain 5 of 7, from 160 to 192: score 45.9, E = 1.3e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+ PL lA+++g+ e++ +Ll++GAd+n +++   
    KIAA1334   160    DGNIPLLLAVQNGHSEICHFLLDHGADVNSRNK    192  

PF00023.20.fs: domain 5 of 7, from 160 to 192: score 43.9, E = 2.9e-11
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+ PL lA+++g+ e++ +Ll++GAd+n +++   
    KIAA1334   160    DGNIPLLLAVQNGHSEICHFLLDHGADVNSRNK    192  

PF00023.20.fs: domain 6 of 7, from 193 to 225: score 39.1, E = 6.3e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA++ g+ + v+ L+++GAdln++d    
    KIAA1334   193    SGRTALMLACEIGSSNAVEALIKKGADLNLVDS    225  

PF00023.20.ls: domain 6 of 7, from 193 to 225: score 41.1, E = 3.5e-09
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA++ g+ + v+ L+++GAdln++d    
    KIAA1334   193    SGRTALMLACEIGSSNAVEALIKKGADLNLVDS    225  

PF00023.20.fs: domain 7 of 7, from 226 to 261: score 6.7, E = 0.7
                   *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-*
                       G+ +LH+  l+ n+ + +lLls+ +q Adl   ++   
    KIAA1334   226    LGYNALHYSKLSENAGIQSLLLSkisQDADLKTPTK    261  

PF00023.20.ls: domain 7 of 7, from 226 to 261: score 8.7, E = 1.6
                   *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-*
                       G+ +LH+  l+ n+ + +lLls+ +q Adl   ++   
    KIAA1334   226    LGYNALHYSKLSENAGIQSLLLSkisQDADLKTPTK    261  

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