hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23562486/chunk_1/iprscan-20080501-23562486.nocrc
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Query sequence: KIAA1334
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 157.6    1.3e-42   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/6      61    90 ..     1    30 []    36.8  2.9e-06
SM00248    2/6      94   126 ..     1    30 []    23.7    0.025
SM00248    3/6     127   156 ..     1    30 []    25.9   0.0057
SM00248    4/6     160   189 ..     1    30 []    36.2  4.3e-06
SM00248    5/6     193   222 ..     1    30 []    31.9  8.7e-05
SM00248    6/6     226   256 ..     1    30 []     3.0  1.8e+03

Alignments of top-scoring domains:
SM00248: domain 1 of 6, from 61 to 90: score 36.8, E = 2.9e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+T++HlAa++g++e+++ ++ +g+d++a   
    KIAA1334    61    EGKTAFHLAAAKGHVECLRVMITHGVDVTA    90   

SM00248: domain 2 of 6, from 94 to 126: score 23.7, E = 0.025
                   *->dGrTpLHlAaengnlevvklLldkga...dina<-*
                       G+++LHlAa+n ++e+++ Ll+++ + ++++    
    KIAA1334    94    TGHSALHLAAKNSHHECIRKLLQSKCpaeSVDS    126  

SM00248: domain 3 of 6, from 127 to 156: score 25.9, E = 0.0057
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+LH+Aa+ g l  v++L +++  in+   
    KIAA1334   127    SGKTALHYAAAQGCLQAVQILCEHKSPINL    156  

SM00248: domain 4 of 6, from 160 to 189: score 36.2, E = 4.3e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG+ pL lA++ng+ e++++Lld+gad+n    
    KIAA1334   160    DGNIPLLLAVQNGHSEICHFLLDHGADVNS    189  

SM00248: domain 5 of 6, from 193 to 222: score 31.9, E = 8.7e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       GrT+L+lA+e g+ + v++L++kgad+n+   
    KIAA1334   193    SGRTALMLACEIGSSNAVEALIKKGADLNL    222  

SM00248: domain 6 of 6, from 226 to 256: score 3.0, E = 1.8e+03
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                       G+++LH+   + n  +  lLl+k  +d ++   
    KIAA1334   226    LGYNALHYSKLSENAGIQSLLLSKISqDADL    256  

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