Gene/Protein Characteristic Table for KIAA1329
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Product ID ORK06945
Accession No AB037750
Description sortilin-related VPS10 domain containing receptor 2
Clone name fh14788
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5287 bp)
Predicted protein sequence (907 aa)
Source Human fetal brain
Rouge ID mKIAA1329 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5287 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 2563 bp
Genome contig ID gi89161207f_7591063
PolyA signal sequence
(ATTAAA,-20)
+----*----+----*----+----*----+----
ATGCTTTTAACAAAGATTAAATGAATTTGATCAGC
Flanking genome sequence
(204393 - 204442)
----+----*----+----*----+----*----+----*----+----*
TTTTGCCTTATTGTGAAGATACTTTCCTCCTTTCCTGAAATGCATGTGGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 4 f 7691063 7795454 24 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 907 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q96PQ0 0 100.0 VPS10 domain-co...
Homo sapiens
AAI56054 0 99.9 Sortilin-relate...
synthetic construct
EAW82363 0 99.9 sortilin-relate...
Homo sapiens
BAG58506 0 98.4 unnamed protein...
Homo sapiens
XP_545903 0 90.5 similar to VPS1...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB028982 1.4e-160 45.0 KIAA1059
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR002860 21 32 PF02012 Glycoside hydrolase
IPR002860 216 227 PF02012 Glycoside hydrolase
IPR002860 293 304 PF02012 Glycoside hydrolase
IPR002860 335 346 PF02012 Glycoside hydrolase
IPR000601 535 617 PF00801 PKD
HMMSmart IPR006581 1 528 SM00602 VPS10
IPR000601 530 620 SM00089 PKD
ProfileScan IPR000601 564 624 PS50093 PKD

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 827 GYWAVVVLFVIGLFAAGAFILYK 849 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TTAAGGCAACATCAGCAAACC
Primer_r AGGTTGTAGGTGTCCATCTGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 4
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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