hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23481030/chunk_1/iprscan-20080501-23481030.nocrc
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Query sequence: KIAA1329
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00801.10.fs PKD domain                                      27.3    2.7e-07   2
PF00801.10.ls PKD domain                                      31.0    3.9e-06   2
PF02012.10.ls BNR/Asp-box repeat                              30.1    7.2e-06   4
PF02012.10.fs BNR/Asp-box repeat                              22.8    1.2e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02012.10.ls   1/4      21    32 ..     1    12 []    10.9      4.2
PF02012.10.ls   2/4     216   227 ..     1    12 []     1.4       74
PF02012.10.ls   3/4     293   304 ..     1    12 []     6.8       15
PF02012.10.ls   4/4     335   346 ..     1    12 []    11.1      3.8
PF00801.10.fs   1/2     535   617 ..     1    92 []    24.8  1.4e-06
PF00801.10.ls   1/2     535   617 ..     1    92 []    26.6  7.9e-05

Alignments of top-scoring domains:
PF02012.10.ls: domain 1 of 4, from 21 to 32: score 10.9, E = 4.2
                   *->yyStDgGkTWsk<-*
                      y+S D Gk W++   
    KIAA1329    21    YVSSDLGKKWTL    32   

PF02012.10.ls: domain 2 of 4, from 216 to 227: score 1.4, E = 74
                   *->yyStDgGkTWsk<-*
                       ++++ G+ W +   
    KIAA1329   216    LITYNKGRDWDY    227  

PF02012.10.ls: domain 3 of 4, from 293 to 304: score 6.8, E = 15
                   *->yyStDgGkTWsk<-*
                      y++ D G TW     
    KIAA1329   293    YITSDCGHTWRQ    304  

PF02012.10.ls: domain 4 of 4, from 335 to 346: score 11.1, E = 3.8
                   *->yyStDgGkTWsk<-*
                       +S D G TWs+   
    KIAA1329   335    KFSVDEGLTWST    346  

PF00801.10.fs: domain 1 of 2, from 535 to 617: score 24.8, E = 1.4e-06
                   *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD...g
                      ++++     +  v +ge V F  +   ++d    + y+ d GD+ + 
    KIAA1329   535    IQGE-----AVAVRPGEDVLFVVRQ-EQGD-VLTTKYQVDLGDgfkA 574  

                   gstgltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-
                       lt+t+  + H Y++    pG Y V+++++N +g++ a  ++v V  
    KIAA1329   575 MYVNLTLTGEPIRHRYES----PGIYRVSVRAENTAGHDEAV-LFVQV   617  

                   *
                    
    KIAA1329     -   -    

PF00801.10.ls: domain 1 of 2, from 535 to 617: score 26.6, E = 7.9e-05
                   *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD...g
                      ++++     +  v +ge V F  +   ++d    + y+ d GD+ + 
    KIAA1329   535    IQGE-----AVAVRPGEDVLFVVRQ-EQGD-VLTTKYQVDLGDgfkA 574  

                   gstgltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-
                       lt+t+  + H Y++    pG Y V+++++N +g++ a  ++v V  
    KIAA1329   575 MYVNLTLTGEPIRHRYES----PGIYRVSVRAENTAGHDEAV-LFVQV   617  

                   *
                    
    KIAA1329     -   -    

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