Gene/Protein Characteristic Table for KIAA1320
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Product ID ORK05390
Accession No AB037741
Description HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
Clone name fh13757
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5321 bp)
Predicted protein sequence (567 aa)
Source Human fetal brain
Rouge ID mKIAA1320 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5321 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1567 bp
Genome contig ID gi89161210r_105182663
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
GTAAAAGAGATAGATAATAAAATATTAAATAACTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTGTGGTGGCTTATGTCTGTAATCTCAGCATTTCGAGAGGCTGAGGTGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 r 105282663 105341982 13 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 567 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAH71889 0 100.0 HECT domain and...
Homo sapiens
CAH71890 0 99.8 HECT domain and...
Homo sapiens
Q8IYU2 0 99.8 E3 ubiquitin-pr...
Homo sapiens
BAE00393 0 99.5 unnamed protein...
Macaca fascicularis
XP_001142834 0 99.6 HECT domain and...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB002310 4.5e-55 37.2 KIAA0312
AB007899 6.5e-54 42.6 KIAA0439
D42055 3.3e-52 41.3 KIAA0093
AB046845 2.2e-50 42.2 KIAA1625
AB002320 4e-49 41.7 KIAA0322
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000569 260 567 PF00632 HECT
HMMSmart IPR000569 230 567 SM00119 HECT
ProfileScan IPR000569 232 567 PS50237 HECT
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CTGTGCCATATACTCCAAATC
Primer_r ATTGTGCATCAGTAGTCAGAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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