hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23332642/chunk_1/iprscan-20080501-23332642.nocrc
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Query sequence: KIAA1320
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00119                                                 475.4   2.7e-138   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00119    1/1     230   567 .]     1   407 []   475.4 2.7e-138

Alignments of top-scoring domains:
SM00119: domain 1 of 1, from 230 to 567: score 475.4, E = 2.7e-138
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                      + +   Lk+     + ++f       gEeg  g Gv rE+f  ls e
    KIAA1320   230    KANCAKLKQG----IAVRF------HGEEGM-GQGVVREWFDILSNE 265  

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                   + np dy+LF+ s++ +              +++pn  +++ n++hl+  
    KIAA1320   266 IVNP-DYALFTQSADGT--------------TFQPNSNSYV-NPDHLN-- 297  

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                   yFrf G +lG+Al +++l+  +F+r+FyK++Lg p    v+++D +s+DP
    KIAA1320   298 YFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIP----VNYQDVASIDP 343  

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                   e+ k+L+w+                   l+ndi++++l+  LtF +v++ 
    KIAA1320   344 EYAKNLQWI-------------------LDNDISDLGLE--LTF-SVETD 371  

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                    fg  ++v+LkpGG +i VT+ Nk EYV lv+e r+++ ++ q +AF++G
    KIAA1320   372 VFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQG 421  

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   F++ ip++l++ lFde ELeLL++G++ eidv+d+++nTey  gY ++++
    KIAA1320   422 FHMFIPPSLIQ-LFDEYELELLLSGMP-EIDVSDWIKNTEYTSGYEREDP 469  

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq
                   +i   +wFWevve  t+eer +LLqFVTGssr+P   gGFa++ +  G+q
    KIAA1320   470 VI---QWFWEVVEDITQEERVLLLQFVTGSSRVP--HGGFANIMGGSGLQ 514  

                   kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg
                    FtI  ++         LPt++TC+N+LkLP+Y SkeiL+ +LL A  + 
    KIAA1320   515 NFTIAAVPY----TPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHC- 559  

                   RiggeGFgls<-*
                     g+ G+ ++   
    KIAA1320   560 --GSYGYTMA    567  

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