Gene/Protein Characteristic Table for KIAA1202
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Product ID ORK00765
Accession No AB033028
Description shroom family member 4, transcript variant 1
Clone name fg03353
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (6014 bp)
Predicted protein sequence (1502 aa)
Flexi ORF Clone FXC00765
Source Human fetal brain
Rouge ID mKIAA1202 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 6014 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1491 bp
Genome contig ID gi89161218r_50251844
PolyA signal sequence
(AAGAAA,-29)
+----*----+----*----+----*----+----
GAAAGAAAGAAAACAGTTCCATTTACAATAGCATC
Flanking genome sequence
(99543 - 99494)
----+----*----+----*----+----*----+----*----+----*
AAAAAGAAAAAAGTACTTAGGAATAATTTAACAAAAGAAGTGCGAAACTT
Features of the protein sequence
Description

Length: 1502 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9ULL8 0 100.0 Protein Shroom4...
Homo sapiens
NP_065768 0 99.6 shroom family m...
Homo sapiens
XP_855411 0 84.4 similar to shro...
Canis lupus fam...
XP_001083331 0 83.7 similar to shro...
Macaca mulatta
XP_228786 0 77.9 similar to shro...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB040914 6.7e-17 25.5 KIAA1481
AB075840 1.3e-05 30.4 KIAA1960
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001478 16 93 PF00595 PDZ/DHR/GLGF
IPR014800 774 786 PF08688 Apx/shroom
IPR014799 1204 1495 PF08687 Apx/shroom
HMMSmart IPR001478 23 96 SM00228 PDZ/DHR/GLGF
ProfileScan IPR001478 14 96 PS50106 PDZ/DHR/GLGF
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TCTACCCTTACCTTTCCCAGC
Primer_r TGAAACAAGAGGTGGTAGGAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f TCTACCCTTACCTTTCCCAGC
Primer_r TGAAACAAGAGGTGGTAGGAC
PCR product length 112 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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