hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19311614/chunk_1/iprscan-20080501-19311614.nocrc
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Query sequence: KIAA1177
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00386                                                 145.8    4.5e-39   9
SM00028                                                  28.9    0.00069   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00386     1/9      24    58 ..     1    34 []    22.0    0.085
SM00028     1/3     156   189 ..     1    34 []    11.2       27
SM00386     2/9     170   205 ..     1    34 []    29.0  0.00066
SM00028     2/3     295   328 ..     1    34 []     4.3  1.6e+02
SM00386     3/9     309   345 ..     1    34 []    11.7       33
SM00028     3/3     333   366 ..     1    34 []    13.4       15
SM00386     4/9     347   396 ..     1    34 []     2.7  5.4e+02
SM00386     5/9     398   430 ..     1    34 []    12.3       27
SM00386     6/9     432   466 ..     1    34 []    15.3      8.7
SM00386     7/9     471   505 ..     1    34 []    32.4  6.3e-05
SM00386     8/9     507   541 ..     1    34 []     1.0  9.2e+02
SM00386     9/9     579   613 ..     1    34 []    19.5     0.47

Alignments of top-scoring domains:
SM00386: domain 1 of 9, from 24 to 58: score 22.0, E = 0.085
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      g   + R++++ral+  p +++ ++W  Y++f+++   
    KIAA1177    24    GRVTHTRRTFDRALRALPiTQHSRIWPLYLRFLRS    58   

SM00028: domain 1 of 3, from 156 to 189: score 11.2, E = 27
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       + ++ l+  y + g +++A + ye+A++   +    
    KIAA1177   156    GKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTV    189  

SM00386: domain 2 of 9, from 170 to 205: score 29.0, E = 0.00066
                   *->gdieraRkiyeralekfp..dksvdlWlkYaefEer<-*
                      g++e+aR++ye a++++ +   + +++ +Ya+fEe+   
    KIAA1177   170    GHFEKARDVYEEAIRTVMtvRDFTQVFDSYAQFEES    205  

SM00028: domain 2 of 3, from 295 to 328: score 4.3, E = 1.6e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         +   +  y+ +g++d+A   +ekA +++ +    
    KIAA1177   295    HTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ    328  

SM00386: domain 3 of 9, from 309 to 345: score 11.7, E = 33
                   *->gdieraRkiyeralekfp...dksvdlWlkYaefEer<-*
                      g  + aR i+e+a ++++++ d   ++W +  e+E r   
    KIAA1177   309    GQLDDARVILEKATKVNFkqvDDLASVWCQCGELELR    345  

SM00028: domain 3 of 3, from 333 to 366: score 13.4, E = 15
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a ++++ G++ l+ ++ydeA+  ++kA +l       
    KIAA1177   333    ASVWCQCGELELRHENYDEALRLLRKATALPARR    366  

SM00386: domain 4 of 9, from 347 to 396: score 2.7, E = 5.4e+02
                   *->gdieraRkiyeralekfp................dksvdlWlkYaef
                      +++++a +++ +a + + ++ +  +++++ +++ +ks ++W + a++
    KIAA1177   347    ENYDEALRLLRKATALPArraeyfdgsepvqnrvYKSLKVWSMLADL 393  

                   Eer<-*
                   Ee+   
    KIAA1177   394 EES    396  

SM00386: domain 5 of 9, from 398 to 430: score 12.3, E = 27
                   *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-*
                      g ++   ++y+r l+      +++ + Ya+f+e+   
    KIAA1177   398    GTFQSTKAVYDRILDLRI-ATPQIVINYAMFLEE    430  

SM00386: domain 6 of 9, from 432 to 466: score 15.3, E = 8.7
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      +++e+  k yer++  f   ++ d+W  Y+   ++   
    KIAA1177   432    KYFEESFKAYERGISLFKwPNVSDIWSTYLTKFIA    466  

SM00386: domain 7 of 9, from 471 to 505: score 32.4, E = 6.3e-05
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      ++ eraR+++e+al+ +p+ + + l+l Ya++Ee+   
    KIAA1177   471    RKLERARDLFEQALDGCPpKYAKTLYLLYAQLEEE    505  

SM00386: domain 8 of 9, from 507 to 541: score 1.0, E = 9.2e+02
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      g  ++a ++yera + + + +++d+++ Y++   +   
    KIAA1177   507    GLARHAMAVYERATRAVEpAQQYDMFNIYIKRAAE    541  

SM00386: domain 9 of 9, from 579 to 613: score 19.5, E = 0.47
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      g+i+raR+iy  +   + + +   +W+ + +fE r   
    KIAA1177   579    GEIDRARAIYSFCSQICDpRTTGAFWQTWKDFEVR    613  

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