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Product ID | ORK04416 |
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Accession No | AB032946 |
Description | calcium channel, voltage-dependent, T type, alpha 1I subunit |
Clone name | hg02941 |
Vector information | |
cDNA sequence | DNA sequence (6405 bp) Predicted protein sequence (1024 aa) |
Source | Human adult brain |
N-terminal truncation | Coding interruption | |
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cloned DNA seq | Warning | No warning |
Length of 3'UTR | 3329 bp |
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Genome contig ID | gi89161203f_38290042 |
PolyA signal sequence (AATAAA,-23) |
+----*----+----*----+----*----+---- |
Flanking genome sequence (125641 - 125690) |
----+----*----+----*----+----*----+----*----+----* |
Ensembl ContigView (Add our DAS server as a DAS source)
Chr | f/r | start | end | exon | identity | class | |
---|---|---|---|---|---|---|---|
| 22 | f | 38390041 | 38415681 | 18 | 99.4 | Perfect prediction |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
FPrintScan | IPR002077 | 94 | 109 | PR00167 | Ca2+ channel |
IPR002077 | 460 | 486 | PR00167 | Ca2+ channel | |
HMMPfam | IPR005821 | 7 | 231 | PF00520 | Ion transport |
IPR005821 | 322 | 530 | PF00520 | Ion transport |
Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 9 | NYIFTAIFVGEMTLKVVSLGLYF | 31 | SECONDARY | 23 | 2 | 48 | LVFVSIIDIVVSLASAGGAKILG | 70 | PRIMARY | 23 | 3 | 107 | IGNIVLICCAFFIIFGILGVQLF | 129 | PRIMARY | 23 | 4 | 168 | GQALMSLFVLASKDGWVNIMYNG | 190 | SECONDARY | 23 | 5 | 210 | LYFISFLLIVSFFVLNMFVGVVV | 232 | PRIMARY | 23 | 6 | 288 | HYLDIFITFIICLNVVTMSLEH | 309 | PRIMARY | 22 | 7 | 323 | CNYMFTTVFVLEAVLKLVAFGL | 344 | SECONDARY | 22 | 8 | 351 | RWNQLDLAIVLLSVMGITLEEIE | 373 | PRIMARY | 23 | 9 | 377 | ALPINPTIIRIMRVLRIARVLKL | 399 | SECONDARY | 23 | 10 | 423 | LGLLFMLLFFIYAALGVELFGKL | 445 | PRIMARY | 23 | 11 | 506 | VSPLYFVSFVLTAQFVLINVVVA | 528 | PRIMARY | 23 |
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Primer_f | TTAGCCCAGATACACATACTC |
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Primer_r | AGCGCCATCAGCAACTAGGAG |
PCR conditions | 95 °C![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Panel name | GeneBridge 4 |
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Primer_f | TTAGCCCAGATACACATACTC |
Primer_r | AGCGCCATCAGCAACTAGGAG |
PCR product length | 209 bp |
PCR conditions | 95 °C![]() ![]() ![]() ![]() |