hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17564528/chunk_1/iprscan-20080501-17564528.nocrc
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Query sequence: KIAA1120
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00520.21.ls Ion transport protein                         430.7   1.9e-126   2
PF00520.21.fs Ion transport protein                         426.9   2.5e-125   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/2       7   231 ..     1   224 []   230.8  2.8e-66
PF00520.21.ls   1/2       7   231 ..     1   224 []   232.7  7.6e-67
PF00520.21.fs   2/2     322   530 ..     1   224 []   196.1  7.5e-56
PF00520.21.ls   2/2     322   530 ..     1   224 []   198.0  2.1e-56

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 2, from 7 to 231: score 230.8, E = 2.8e-66
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      + +y+ft+iF+ Em lk+++lg+ ++    ++Ylrs wN+lD + v 
    KIAA1120     7    VSNYIFTAIFVGEMTLKVVSLGLYFG---EQAYLRSSWNVLDGFLVF 50   

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +s+i++++sl   g                  +  +l+vlr+lRllR+LR
    KIAA1120    51 VSIIDIVVSLASAG------------------GAKILGVLRVLRLLRTLR 82   

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   +lr+i+rapg     l+ +  + +l+ slk+++n++l+++ +++iF+i+g
    KIAA1120    83 PLRVISRAPG-----LKLV--VETLISSLKPIGNIVLICCAFFIIFGILG 125  

                   vqlFggklnkcc..................npingntnFdsfgnaflwlF
                   vqlF+gk+++c + ++ + ++ +++   + ++++ + nFd+ g+a+++lF
    KIAA1120   126 VQLFKGKFYHCLgvdtrnitnrsdcmaanyRWVHHKYNFDNLGQALMSLF 175  

                   qtmTteGwgdvmpdtl...........agtvlgyiyfvsfiilgsflllN
                   ++++ +Gw+++m+++l+    ++++ +++++++ +yf+sf +++sf++lN
    KIAA1120   176 VLASKDGWVNIMYNGLdavavdqqpvtNHNPWMLLYFISFLLIVSFFVLN 225  

                   Lfiavi<-*
                   +f++v+   
    KIAA1120   226 MFVGVV    231  

PF00520.21.ls: domain 1 of 2, from 7 to 231: score 232.7, E = 7.6e-67
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      + +y+ft+iF+ Em lk+++lg+ ++    ++Ylrs wN+lD + v 
    KIAA1120     7    VSNYIFTAIFVGEMTLKVVSLGLYFG---EQAYLRSSWNVLDGFLVF 50   

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +s+i++++sl   g                  +  +l+vlr+lRllR+LR
    KIAA1120    51 VSIIDIVVSLASAG------------------GAKILGVLRVLRLLRTLR 82   

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   +lr+i+rapg     l+ +  + +l+ slk+++n++l+++ +++iF+i+g
    KIAA1120    83 PLRVISRAPG-----LKLV--VETLISSLKPIGNIVLICCAFFIIFGILG 125  

                   vqlFggklnkcc..................npingntnFdsfgnaflwlF
                   vqlF+gk+++c + ++ + ++ +++   + ++++ + nFd+ g+a+++lF
    KIAA1120   126 VQLFKGKFYHCLgvdtrnitnrsdcmaanyRWVHHKYNFDNLGQALMSLF 175  

                   qtmTteGwgdvmpdtl...........agtvlgyiyfvsfiilgsflllN
                   ++++ +Gw+++m+++l+    ++++ +++++++ +yf+sf +++sf++lN
    KIAA1120   176 VLASKDGWVNIMYNGLdavavdqqpvtNHNPWMLLYFISFLLIVSFFVLN 225  

                   Lfiavi<-*
                   +f++v+   
    KIAA1120   226 MFVGVV    231  

PF00520.21.fs: domain 2 of 2, from 322 to 530: score 196.1, E = 7.5e-56
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +++y ft++F+lE++lk++a+g+       +++++++wN lD+++vl
    KIAA1120   322    YCNYMFTTVFVLEAVLKLVAFGL-------RRFFKDRWNQLDLAIVL 361  

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +s+++++l++ ++               +  +++p++++++r+lR+ R  
    KIAA1120   362 LSVMGITLEEIEI--------------NAALpINPTIIRIMRVLRIAR-- 395  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                    +l+l+++a g     +r l  l +++++l++ +n++ll++ll+fi+a +
    KIAA1120   396 -VLKLLKMATG-----MRAL--LDTVVQALPQVGNLGLLFMLLFFIYAAL 437  

                   gvqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmpd
                   gv lFg+    +++++++  ++  F++fg+afl+lFq++T+++w+++m d
    KIAA1120   438 GVELFGKLVCNDEnpcEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKD 487  

                   tl............agtvlgyiyfvsfiilgsflllNLfiavi<-*
                   tl++ ++++++  ++  +++ +yfvsf++ + f+l+N+++av+   
    KIAA1120   488 TLrdcthdersclsSLQFVSPLYFVSFVLTAQFVLINVVVAVL    530  

PF00520.21.ls: domain 2 of 2, from 322 to 530: score 198.0, E = 2.1e-56
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +++y ft++F+lE++lk++a+g+       +++++++wN lD+++vl
    KIAA1120   322    YCNYMFTTVFVLEAVLKLVAFGL-------RRFFKDRWNQLDLAIVL 361  

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +s+++++l++ ++               +  +++p++++++r+lR+ R  
    KIAA1120   362 LSVMGITLEEIEI--------------NAALpINPTIIRIMRVLRIAR-- 395  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                    +l+l+++a g     +r l  l +++++l++ +n++ll++ll+fi+a +
    KIAA1120   396 -VLKLLKMATG-----MRAL--LDTVVQALPQVGNLGLLFMLLFFIYAAL 437  

                   gvqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmpd
                   gv lFg+    +++++++  ++  F++fg+afl+lFq++T+++w+++m d
    KIAA1120   438 GVELFGKLVCNDEnpcEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKD 487  

                   tl............agtvlgyiyfvsfiilgsflllNLfiavi<-*
                   tl++ ++++++  ++  +++ +yfvsf++ + f+l+N+++av+   
    KIAA1120   488 TLrdcthdersclsSLQFVSPLYFVSFVLTAQFVLINVVVAVL    530  

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