# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg02941.fasta.huge -Q ../query/KIAA1120.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1120, 1024 aa vs ./tmplib.24314 library 1986481 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.6988+/-0.00937; mu= -3.4860+/- 0.633 mean_var=365.9875+/-86.892, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.067041 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1123 ( 1717 res) fh01458 (1717) 3071 312.0 4.4e-85 KIAA1356 ( 519 res) fj01605 ( 519) 518 64.4 4.4e-11 >>KIAA1123 ( 1717 res) fh01458 (1717 aa) initn: 3064 init1: 2761 opt: 3071 Z-score: 1619.3 bits: 312.0 E(): 4.4e-85 Smith-Waterman score: 3132; 54.842% identity (71.542% similar) in 1012 aa overlap (1-994:757-1717) 10 20 30 KIAA11 ERIFLTVSNYIFTAIFVGEMTLKVVSLGLY ::::::.:::::::.:..:::.:::.:: KIAA11 KMFDHVVLVIIFLNCITIAMERPKIDPHSAERIFLTLSNYIFTAVFLAEMTVKVVALGWC 730 740 750 760 770 780 40 50 60 70 80 90 KIAA11 FGEQAYLRSSWNVLDGFLVFVSIIDIVVSLASAGGAKILGVLRVLRLLRTLRPLRVISRA ::::::::::::::::.::..:.:::.::..: .:.::::.::::::::::::::::::: KIAA11 FGEQAYLRSSWNVLDGLLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRA 790 800 810 820 830 840 100 110 120 130 140 150 KIAA11 PGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNRSDC :::::::::.::::::::::.:::::::::::::::::::::. : : :::::::.::: KIAA11 QGLKLVVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGKFFVCQGEDTRNITNKSDC 850 860 870 880 890 900 160 170 180 190 200 210 KIAA11 MAANYRWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYNGLDAVAVDQQPVTNHNPWMLL :.::::.:::::::::::::::::::::::::.:::.:::::.:::::. :::::::: KIAA11 AEASYRWVRHKYNFDNLGQALMSLFVLASKDGWVDIMYDGLDAVGVDQQPIMNHNPWMLL 910 920 930 940 950 960 220 230 240 250 260 270 KIAA11 YFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRLPY :::::::::.::::::::::::::::::::::: :::::::::::::::::::::: :: KIAA11 YFISFLLIVAFFVLNMFVGVVVENFHKCRQHQEEEEARRREEKRLRRLEKKRRKAQCKPY 970 980 990 1000 1010 1020 280 290 300 310 320 330 KIAA11 YATYCHTRLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTV :. : . :::.: .:::::::.::: .: ::::::..:::.:: :. ::: :::.::.. KIAA11 YSDYSRFRLLVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKICNYIFTVI 1030 1040 1050 1060 1070 1080 340 350 360 370 380 390 KIAA11 FVLEAVLKLVAFGLRRFFKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRV ::::.:.::::::.::::.::::::::::::::.:::::::::.::.::::::::::::: KIAA11 FVLESVFKLVAFGFRRFFQDRWNQLDLAIVLLSIMGITLEEIEVNASLPINPTIIRIMRV 1090 1100 1110 1120 1130 1140 400 410 420 430 440 450 KIAA11 LRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDE :::::::::::::.:::::::::.:::::::::::::::::::.::::::::: : :.. KIAA11 LRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDET 1150 1160 1170 1180 1190 1200 460 470 480 490 500 510 KIAA11 NPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRDCTHDERSCLSSLQFVSPLY .::::..:::::.::::::::::.:::::::::::::::::: . : .: ... .::.: KIAA11 HPCEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIMKDTLRDCDQ-ESTCYNTV--ISPIY 1210 1220 1230 1240 1250 1260 520 530 540 550 560 570 KIAA11 FVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEDAEMDAELELEMAHGLGPGPRLPTGSP ::::::::::::.:::.:::::::..:::::.:.::..::::::: . :.: :. : ::: KIAA11 FVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEEAELEAELELEM-KTLSPQPHSPLGSP 1270 1280 1290 1300 1310 1320 580 590 600 610 620 KIAA11 GA-PG-RGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDS-LEGELTIIDNLSG :: .:: . . :.: .. . .. :. .. . . : : . :: KIAA11 FLWPGVEGPDSPDS--PKPGALHPAAHARSASHFSLEHPTMQPHPTELPGPDLLTVRKSG 1330 1340 1350 1360 1370 1380 630 640 650 660 670 680 KIAA11 SIFHHYSSPAGCKKCHHDKQEVQLAETEAFSLNSDRSSSILLGDDLSLEDPTACPPGRKD . . .: : :.: . ....: . .:.:.: . : . :: KIAA11 -VSRTHSLPNDSYMCRHGSTAEGPLGHRGWGLPKAQSGSVLSVHSQP-ADTSYILQLPKD 1390 1400 1410 1420 1430 690 700 710 720 730 740 KIAA11 SKGELDPPEPMRVGDLGECFFPLSSTAVSPDPENFLCEMEEIPFNPVRSWLKHDSSQAPP . :.: : . . : . :: . : .. : . . .. .:. KIAA11 APHLLQPHSAPTWGTIPK----LPPPGRSPLAQRPLRRQAAIRTDSLD--VQGLGSRE-- 1440 1450 1460 1470 1480 1490 750 760 770 780 790 800 KIAA11 SPFSPDASSPLLPMPAEFFHPAVSASQKGPEKGTGTGTLPKIALQGSWASLRSPRVNCTL . ..:.: :. . . :..: .. . . ::. . .: . : KIAA11 -DLLAEVSGPSPPLARAYSFWGQSSTQAQQHSRSHS----KISKH------MTPPAPCP- 1500 1510 1520 1530 810 820 830 840 850 860 KIAA11 LRQATGSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRRALGPPA---PAPGPRAGLSPAA : . . .: . .::. : : .: : ::. :.:: . . KIAA11 -----GPEPNWGKGPPETRSSLELDTELSWISGD-----LLPPGGQEEPPSPRDLKKCYS 1540 1550 1560 1570 1580 870 880 890 900 910 920 KIAA11 RRRLSLRGRGLFSLRGLRAHQRSHSSGGST-SPGCTHHDSMDPSDEEGRGGAGGGGAGSE . : . : : .:: :: . : . : : . :::. :: :: ::. KIAA11 VEAQSCQRRPTSWLD----EQRRHSIAVSCLDSGSQPHLGTDPSN---LGGQPLGGPGSR 1590 1600 1610 1620 1630 1640 930 940 950 960 970 KIAA11 HSETLSSLSLTSLFCPPP---P--PPAPGLTPARKFSSTSSLAAPGRPHAAALAHGLARS .. :: :.: . :: : ::.::. :. :..: : :.. ..: : KIAA11 PKKKLSPPSIT--IDPPESQGPRTPPSPGICLRRRAPSSDS----KDPLASGPPDSMAAS 1650 1660 1670 1680 1690 980 990 1000 1010 1020 KIAA11 PSWAADR------SKDPPGRAPLPMGLGPLAPPPQPLPGELEPGDAASKRKR :: : :.:: : KIAA11 PSPKKDVLSLSGLSSDPADLDP 1700 1710 >>KIAA1356 ( 519 res) fj01605 (519 aa) initn: 302 init1: 194 opt: 518 Z-score: 290.9 bits: 64.4 E(): 4.4e-11 Smith-Waterman score: 518; 31.692% identity (65.538% similar) in 325 aa overlap (251-561:7-321) 230 240 250 260 270 KIAA11 FFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKK--RRKAQRLPYYATYCHTR :.:. :: .: :. : . . KIAA13 DIFMTEEQKKYYNAMKKLGSKKPQK-PIPRPANKFQ 10 20 30 280 290 300 310 320 330 KIAA11 LLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVLK .. .. : . .:: : ..::::.::: .: .: . .:. : .: ..:. : ::: KIAA13 GMVFDFVTRQVFDISIMILICLNMVTMMVETDDQGKYMTLVLSRINLVFIVLFTGEFVLK 40 50 60 70 80 90 340 350 360 370 380 390 KIAA11 LVAFGLRRF-FKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVL ::. ::.. : :: .:...:.::..:. : :. :. . ..::..:..:. ::.:.: KIAA13 LVS--LRHYYFTIGWNIFDFVVVILSIVGMFLAEM-IEKYF-VSPTLFRVIRLARIGRIL 100 110 120 130 140 150 400 410 420 430 440 450 KIAA11 KLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGMS .:.: : :.:.:: .....:: . :.:::..:..:::: .:. :. . . :.. KIAA13 RLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYV-----KKEAGID 160 170 180 190 200 460 470 480 490 500 KIAA11 RHATFENFGMAFLTLFQVSTGDNWNGIMKDTLR----DCTHDERSCLSSLQ------FVS .::.:: ... :::..:. .:.:.. : :: : ::.. :. KIAA13 DMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGDCGNPSVG 210 220 230 240 250 260 510 520 530 540 550 560 KIAA11 PLYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQED-AEMDAELELEMAHGLGPGPRLP ..:::... . .:..:. .::...... ...:. : .: : :. :. . . : KIAA13 IFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQF 270 280 290 300 310 320 570 580 590 600 610 620 KIAA11 TGSPGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDSLEGELTIIDNLS KIAA13 IEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEM 330 340 350 360 370 380 1024 residues in 1 query sequences 1986481 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:58 2008 done: Thu Dec 18 15:09:59 2008 Total Scan time: 0.670 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]