Gene/Protein Characteristic Table for KIAA0937
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Product ID ORK00152
Accession No AB023154
Description deltex 4, E3 ubiquitin ligase, transcript variant 1
Clone name hh04715
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5650 bp)
Predicted protein sequence (653 aa)
Flexi ORF Clone FXC00152
Source Human adult brain
Features of the cloned cDNA sequence
Description

Length: 5650 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3686 bp
Genome contig ID gi51511727f_58596541
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
ACAAGAACACAAAAATAAAATGCAAATACAGAGCC
Flanking genome sequence
(136097 - 136146)
----+----*----+----*----+----*----+----*----+----*
AGCTTTGTCACCCAAATCTGTGTCTATTTCTGATAGTCCATGGAATGTGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 11 f 58696541 58732636 9 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 653 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_508449 0 99.7 deltex 4 homolo...
Pan troglodytes
XP_001088765 0 97.1 similar to delt...
Macaca mulatta
Q9Y2E6 0 100.0 Protein deltex-...
Homo sapiens
Q6PDK8 1.2e-208 93.9 Protein deltex-...
Mus musculus
AAH58647 2.2e-208 93.7 Deltex 4 homolo...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB040961 1.1e-40 46.2 KIAA1528
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004170 30 112 PF02825 WWE
IPR004170 113 189 PF02825 WWE
IPR001841 443 501 PF00097 Zinc finger
HMMSmart IPR004170 39 120 SM00678 WWE
IPR004170 122 197 SM00678 WWE
IPR001841 443 501 SM00184 Zinc finger
ProfileScan IPR004170 30 112 PS50918 WWE
IPR004170 113 189 PS50918 WWE
IPR001841 443 502 PS50089 Zinc finger
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TCCCTGAGTCTGTAAGCAACC
Primer_r AATGTGGTCTGTTCCTTTAGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 11
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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