# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh04715.fasta.huge -Q ../query/KIAA0937.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0937, 653 aa
 vs ./tmplib.23663 library

1986852 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.6205+/-0.00765; mu= -1.5270+/- 0.518
 mean_var=278.1396+/-69.063, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.076903

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1528  ( 740 res)   hh03104(revised)            ( 740) 1344 162.7 1.1e-40


>>KIAA1528  ( 740 res)   hh03104(revised)                 (740 aa)
 initn: 1767 init1: 984 opt: 1344  Z-score: 822.6  bits: 162.7 E(): 1.1e-40
Smith-Waterman score: 1791;  46.154% identity (66.124% similar) in 676 aa overlap (2-651:95-740)

                                            10         20        30
KIAA09                              RGRGPEAAAQEEAEEVGRS-GPGRRAAQRRS
                                     :  : . .:.  .  :.. :   . :.  :
KIAA15 KSFLLRSWCLHPEGTVCASSPERKDLPEALGNDPGTPGQRGLKLFGKAAGLLGKMAMAPS
           70        80        90       100       110       120    

                 40        50        60          70             80 
KIAA09 PGLAMLLAS--AVVVWEWLNEHGRWRPYSPAVSHHIEA--VVRAGPRAG-GSVV----LG
       :.:... .:  ::.:::: .  : :.::: .:   ::   : . : : : ::..    ::
KIAA15 PSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRFGLGSLAHSIPLG
          130       140       150       160       170       180    

              90       100       110       120       130       140 
KIAA09 QVDSRLAPYIIDLQSMNQFRQDTGTLRPVRRNYYDPSSAPGKGVVWEWENDNGSWTPYDM
       :.:  :::::::: : .::::::::.: :::. .   ::::.:::::: .:.:::: :. 
KIAA15 QADPSLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEWLSDDGSWTAYEA
          190       200       210       220       230       240    

             150       160       170       180       190       200 
KIAA09 EVGITIQHAYEKQHPWIDLTSIGFSYVIDFNTMGQINRQTQRQRRVRRRLDLIYPMVTGT
        :   ...   . .  .::. .:..:.....:  : :. ..  : :::.    ::..:  
KIAA15 SVCDYLEQQVARGNQLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRRQAGPPYPVTTII
          250       260       270       280       290       300    

             210       220       230       240        250       260
KIAA09 LPKAQSWPVSPGPATSPPMSPCSCPQCVLVMSVKAAVVNGS-TGPLQLPVTRKNMPPPGV
        :     :   : :       ::: ::.          .:: :::..    :..:    .
KIAA15 AP-----PGHTGVA-------CSCHQCL----------SGSRTGPVS-GRYRHSMTNLPA
               310              320                  330       340 

              270       280       290       300       310          
KIAA09 VKLPPLPGSGAKPLDSTGTIRGPLKTAPSQVIRRQASSMPTGTTMGSPASPPGPNSKT-G
         .:  :   .  . .:    .: .  ::    :.:  . : .. :  :.::. .:.   
KIAA15 YPVPQHPPHRTASVFGTHQAFAPYNK-PSLSGARSAPRLNTTNAWG--AAPPSLGSQPLY
             350       360        370       380         390        

     320       330       340                 350       360         
KIAA09 RVALATLNRTNLQRLAIAQSRVL--IASG-------VP-TVPVKNLNGSSPVNPALAGIT
       : .:. :.  .:   . ... :   . ::       :: :::.. .   : :. ::::.:
KIAA15 RSSLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQ-MPKPSRVQQALAGMT
      400       410       420       430       440        450       

     370       380       390       400       410         420       
KIAA09 GILMSAAGLPVCLTRPPKLVLHPPPVSKSEIKSIPGVSNTSRKTTKKQA--KKGKTPEEV
       ..:::: ::::::.: :. .   ::.:.   ::  :  .  :: . :.:  :    ::.:
KIAA15 SVLMSAIGLPVCLSRAPQPT--SPPASRLASKS-HGSVKRLRKMSVKEATPKPEPEPEQV
       460       470         480        490       500       510    

       430       440       450         460       470       480     
KIAA09 LKKYLQKVRHPPDEDCTICMERLTAPSGYKG--PQPTVKPDLVGKLSRCGHVYHIYCLVA
       .:.: .... :::::: ::::.:.: :::.    . ..    ::.:..:.:..:. ::.:
KIAA15 IKNYTEELKVPPDEDCIICMEKLSAASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLA
          520       530       540       550       560       570    

         490       500       510       520       530       540     
KIAA09 MYNNGNKDGSLQCPTCKTIYGVKTGTQPPGKMEYHLIPHSLPGHPDCKTIRIIYSIPPGI
       :: :::::::::::.:::::: :::::: ::::   .  ::::: :: :: :.:::: ::
KIAA15 MYCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPHGI
          580       590       600       610       620       630    

         550       560       570       580       590       600     
KIAA09 QGPEHPNPGKSFSARGFPRHCYLPDSEKGRKVLKLLLVAWDRRLIFAIGTSSTTGESDTV
       :::::::::: :.::::::.:::::. .:::::.:: ::: :::::..::::::::.:::
KIAA15 QGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETDTV
          640       650       660       670       680       690    

         610       620       630       640       650   
KIAA09 IWNEVHHKTEFGSNLTGHGYPDANYLDNVLAELAAQGISEDSTAQEKD
       .:::.:::::.  :.::::::: :::.::::::::::..::   :.  
KIAA15 VWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ  
          700       710       720       730       740  




653 residues in 1 query   sequences
1986852 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:11 2008 done: Thu Dec 18 15:22:12 2008
 Total Scan time:  0.530 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]