Gene/Protein Characteristic Table for KIAA0885
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Product ID ORK00672
Accession No AB020692
Description cold shock domain containing E1, RNA-binding, transcript variant 1
Clone name hk07709
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4076 bp)
Predicted protein sequence (826 aa)
Flexi ORF Clone FXC00672
Source Human adult brain
Rouge ID mKIAA0885 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 4076 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1252 bp
Genome contig ID gi89161185r_114961061
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 1 r 115061061 115102108 20 100.0 Perfect prediction
Features of the protein sequence

Length: 826 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001160588 0 99.9 upstream of NRA...
Pan troglodytes
EDL07606 0 97.6 cold shock doma...
Mus musculus
EAW56616 0 99.6 cold shock doma...
Homo sapiens
O75534 0 100.0 Cold shock doma...
Homo sapiens
CAH18231 0 99.5 hypothetical pr...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR002059 53 118 PF00313 Cold-shock protein
IPR002059 213 276 PF00313 Cold-shock protein
IPR002059 376 441 PF00313 Cold-shock protein
IPR002059 546 610 PF00313 Cold-shock protein
IPR002059 701 766 PF00313 Cold-shock protein
HMMSmart IPR011129 55 118 SM00357 Cold shock protein
IPR011129 215 276 SM00357 Cold shock protein
IPR011129 378 441 SM00357 Cold shock protein
IPR011129 548 610 SM00357 Cold shock protein
IPR011129 703 766 SM00357 Cold shock protein
ScanRegExp IPR002059 65 84 PS00352 Cold-shock protein
IPR002016 71 82 PS00436 Haem peroxidase
IPR002059 225 244 PS00352 Cold-shock protein
IPR002059 388 407 PS00352 Cold-shock protein
IPR002059 558 577 PS00352 Cold-shock protein
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 1
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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