hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15504640/chunk_1/iprscan-20080502-15504640.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0885 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00313.12.fs 'Cold-shock' DNA-binding domain 370.3 2.8e-108 8 PF00313.12.ls 'Cold-shock' DNA-binding domain 357.7 1.8e-104 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00313.12.fs 1/8 53 118 .. 1 71 [] 78.9 1.1e-21 PF00313.12.ls 1/5 53 118 .. 1 71 [] 80.9 3.7e-21 PF00313.12.ls 2/5 213 276 .. 1 71 [] 91.7 2e-24 PF00313.12.fs 3/8 213 276 .. 1 71 [] 89.8 9.1e-25 PF00313.12.ls 3/5 376 441 .. 1 71 [] 29.7 3.8e-06 PF00313.12.fs 5/8 376 424 .. 1 55 [. 28.1 2.6e-07 PF00313.12.fs 7/8 546 610 .. 1 71 [] 76.0 7.4e-21 PF00313.12.ls 4/5 546 610 .. 1 71 [] 77.9 2.9e-20 PF00313.12.fs 8/8 701 766 .. 1 71 [] 75.5 1e-20 PF00313.12.ls 5/5 701 766 .. 1 71 [] 77.4 4e-20 Alignments of top-scoring domains: PF00313.12.fs: domain 1 of 8, from 53 to 118: score 78.9, E = 1.1e-21 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG ++tG+++ + + +GFI++++ ++ +F+H+S+++g+ + L+ G KIAA0885 53 RETGVIEKLLT--SYGFIQCSERQARLFFHCSQYNGNL---QDLKVG 94 qkVeFeivedgGqkGpqAanVtkl<-* ++VeFe+++d+++++p A++ +k+ KIAA0885 95 DDVEFEVSSDRRTGKPIAVKLVKI 118 PF00313.12.ls: domain 1 of 5, from 53 to 118: score 80.9, E = 3.7e-21 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG ++tG+++ + + +GFI++++ ++ +F+H+S+++g+ + L+ G KIAA0885 53 RETGVIEKLLT--SYGFIQCSERQARLFFHCSQYNGNL---QDLKVG 94 qkVeFeivedgGqkGpqAanVtkl<-* ++VeFe+++d+++++p A++ +k+ KIAA0885 95 DDVEFEVSSDRRTGKPIAVKLVKI 118 PF00313.12.ls: domain 2 of 5, from 213 to 276: score 91.7, E = 2e-24 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG +++G+V+ +++ FGFI++ d k++F+H+S+++gd ++Lq+G KIAA0885 213 RCQGVVCAMKE--AFGFIERGDVVKEIFFHYSEFKGDL---ETLQPG 254 qkVeFeivedgGqkGpqAanVtkl<-* ++VeF i + ++++ A++V++l KIAA0885 255 DDVEFTIKD--RNGKEVATDVRLL 276 PF00313.12.fs: domain 3 of 8, from 213 to 276: score 89.8, E = 9.1e-25 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG +++G+V+ +++ FGFI++ d k++F+H+S+++gd ++Lq+G KIAA0885 213 RCQGVVCAMKE--AFGFIERGDVVKEIFFHYSEFKGDL---ETLQPG 254 qkVeFeivedgGqkGpqAanVtkl<-* ++VeF i + ++++ A++V++l KIAA0885 255 DDVEFTIKD--RNGKEVATDVRLL 276 PF00313.12.ls: domain 3 of 5, from 376 to 441: score 29.7, E = 3.8e-06 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG ++ G++ + + GFGFI + d + F+HfS+I ++ L KIAA0885 376 REMGVIAAMRD--GFGFIKCVDRDVRMFFHFSEILDGN----QLHIA 416 qkVeFeivedg.GqkGpqAanVtkl<-* ++VeF +v d ++ +++A + kl KIAA0885 417 DEVEFTVVPDMlSAQRNHAIRIKKL 441 PF00313.12.fs: domain 5 of 8, from 376 to 424: score 28.1, E = 2.6e-07 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG ++ G++ + + GFGFI + d + F+HfS+I ++ L KIAA0885 376 REMGVIAAMRD--GFGFIKCVDRDVRMFFHFSEILDGN----QLHIA 416 qkVeFeiv<-* ++VeF +v KIAA0885 417 DEVEFTVV 424 PF00313.12.fs: domain 7 of 8, from 546 to 610: score 76.0, E = 7.4e-21 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG + G+V ++++ FGFI+ ++++k++F+H+S+++gd+ sL+ G KIAA0885 546 RLLGYVATLKD--NFGFIETANHDKEIFFHYSEFSGDV---DSLELG 587 qkVeFeivedgGqkGpqAanVtkl<-* ++Ve+++++ g+ ++ +A++V+k+ KIAA0885 588 DMVEYSLSK-GKGNKVSAEKVNKT 610 PF00313.12.ls: domain 4 of 5, from 546 to 610: score 77.9, E = 2.9e-20 *->matGtVKWFNaeKGFGFItpedgskDVFVHfSaIqgdgpkfrsLqeG + G+V ++++ FGFI+ ++++k++F+H+S+++gd+ sL+ G KIAA0885 546 RLLGYVATLKD--NFGFIETANHDKEIFFHYSEFSGDV---DSLELG 587 qkVeFeivedgGqkGpqAanVtkl<-* ++Ve+++++ g+ ++ +A++V+k+ KIAA0885 588 DMVEYSLSK-GKGNKVSAEKVNKT 610 PF00313.12.fs: domain 8 of 8, from 701 to 766: score 75.5, E = 1e-20 *->matGtVKWFNaeKGFGFItpedgsk.DVFVHfSaIqgdgpkfrsLqe ++ tV++ ++ +FGFI++e g+ + +F+H++++q + +Lq+ KIAA0885 701 LRRATVECVKD--QFGFINYEVGDSkKLFFHVKEVQDGI----ELQA 741 GqkVeFeivedgGqkGpqAanVtkl<-* G++VeF++ ++++++++A+nV+ + KIAA0885 742 GDEVEFSVILNQRTGKCSACNVWRV 766 PF00313.12.ls: domain 5 of 5, from 701 to 766: score 77.4, E = 4e-20 *->matGtVKWFNaeKGFGFItpedgsk.DVFVHfSaIqgdgpkfrsLqe ++ tV++ ++ +FGFI++e g+ + +F+H++++q + +Lq+ KIAA0885 701 LRRATVECVKD--QFGFINYEVGDSkKLFFHVKEVQDGI----ELQA 741 GqkVeFeivedgGqkGpqAanVtkl<-* G++VeF++ ++++++++A+nV+ + KIAA0885 742 GDEVEFSVILNQRTGKCSACNVWRV 766 //