hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15504640/chunk_1/iprscan-20080502-15504640.nocrc
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Query sequence: KIAA0885
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00357                                                 351.4   5.8e-101   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00357    1/5      55   118 ..     1    70 []    69.8  3.4e-16
SM00357    2/5     215   276 ..     1    70 []    80.2  2.5e-19
SM00357    3/5     378   441 ..     1    70 []    66.2    4e-15
SM00357    4/5     548   610 ..     1    70 []    65.2  8.4e-15
SM00357    5/5     703   766 ..     1    70 []    69.9  3.1e-16

Alignments of top-scoring domains:
SM00357: domain 1 of 5, from 55 to 118: score 69.8, E = 3.4e-16
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      tG+++ +     +GFI+++++  ++ +F+h+s+++g +l  L+ GD 
    KIAA0885    55    TGVIEKLL--TSYGFIQCSER--QARLFFHCSQYNG-NLQDLKVGDD 96   

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef+v s +r++g+p A++++k+   
    KIAA0885    97 VEFEVSS-DRRTGKPIAVKLVKI    118  

SM00357: domain 2 of 5, from 215 to 276: score 80.2, E = 2.5e-19
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      +G+V++++  + FGFI++ d    k++F+h+s+++g +l++L+ GD 
    KIAA0885   215    QGVVCAMK--EAFGFIERGDV--VKEIFFHYSEFKG-DLETLQPGDD 256  

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef++ +   ++g++ A+ vr+l   
    KIAA0885   257 VEFTIKD---RNGKEVATDVRLL    276  

SM00357: domain 3 of 5, from 378 to 441: score 66.2, E = 4e-15
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      +G++ ++   +GFGFI + d+  +  +F+h+s+I +   + L+  D+
    KIAA0885   378    MGVIAAMR--DGFGFIKCVDR--DVRMFFHFSEILD--GNQLHIADE 418  

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef+vv+++  +++++A  ++kl   
    KIAA0885   419 VEFTVVPDMLSAQRNHAIRIKKL    441  

SM00357: domain 4 of 5, from 548 to 610: score 65.2, E = 8.4e-15
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                       G+V +++  ++FGFI+++++  +k++F+h+s++ g +  sL+ GD 
    KIAA0885   548    LGYVATLK--DNFGFIETANH--DKEIFFHYSEFSG-DVDSLELGDM 589  

                   VefdvvsyprggggpqAanvrkl<-*
                   Ve+++ +  ++g + +A++v k    
    KIAA0885   590 VEYSLSK--GKGNKVSAEKVNKT    610  

SM00357: domain 5 of 5, from 703 to 766: score 69.9, E = 3.1e-16
                   *->tGtVkwfnatkGFGFIrpddgsggkDvFvhpsaIqgeglksLreGDk
                      + tV++ +  + FGFI  + g ++k +F+h  ++q+    +L+ GD+
    KIAA0885   703    RATVECVK--DQFGFINYEVG-DSKKLFFHVKEVQD--GIELQAGDE 744  

                   VefdvvsyprggggpqAanvrkl<-*
                   Vef+v   ++++g+++A+nv+ +   
    KIAA0885   745 VEFSVIL-NQRTGKCSACNVWRV    766  

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