Gene/Protein Characteristic Table for KIAA0875
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Product ID ORK00668
Accession No AB020682
Description F-box protein 21, transcript variant 2
Clone name hk07350
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4168 bp)
Predicted protein sequence (621 aa)
Flexi ORF Clone FXC00668
Source Human adult brain
Rouge ID mKIAA0875 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 4168 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 2301 bp
Genome contig ID gi89161190r_115965974
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 12 r 116065974 116112645 12 99.4 Perfect prediction
Features of the protein sequence

Length: 621 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAH91496 0 100.0 FBXO21 protein ...
Homo sapiens
XP_001083109 0 99.7 similar to F-bo...
Macaca mulatta
Q5R5S1 0 99.7 F-box only prot...
Pongo abelii
O94952 0 98.9 F-box only prot...
Homo sapiens
XP_001082993 0 98.6 similar to F-bo...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom NULL 496 573 PD415267 NULL
HMMPfam IPR001810 28 77 PF00646 Cyclin-like F-box
IPR011722 493 593 PF08755 Hemimethylated DNA-binding region
HMMTigr IPR011722 493 590 TIGR02097 Hemimethylated DNA-binding region
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 12
Experimental conditions
Panel name GeneBridge 4
PCR product length 91 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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