Gene/Protein Characteristic Table for KIAA0516
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Product ID ORK06955
Accession No AB011088
Description sperm associated antigen 9
Clone name hg00484s2
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4437 bp)
Predicted protein sequence (1382 aa)
Source Human adult brain
Rouge ID mKIAA0516 by Kazusa Mouse cDNA Project
Note We replaced hg00484 and hg00484s1, former representative clones for KIAA0516 with hg00484s2. (2002/5/10,2005/08/06)
Features of the cloned cDNA sequence
Description

Length: 4437 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 284 bp
Genome contig ID gi51511734r_46298348
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CAAACTGGTGAATTATAGAAAGCAATCCAGATGTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
GTTTACTCTGCCACAGTCTAATGTCATTCACTTCATTTGATGGGGTCACT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 r 46398348 46553203 30 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1382 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O60271 0 100.0 C-jun-amino-ter...
Homo sapiens
XP_001171175 0 99.8 sperm associate...
Pan troglodytes
XP_852670 0 97.6 similar to sper...
Canis lupus fam...
Q58A65 0 96.5 C-jun-amino-ter...
Mus musculus
BAD93176 0 96.4 JSAP2a [Mus mus...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB028989 1.9e-70 57.1 KIAA1066
AB002335 4.9e-07 23.8 KIAA0337
AB046846 1e-05 25.9 KIAA1626
AB002292 6.3e-05 26.1 KIAA0294
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f CTCGGGACATTTAGATACATC
Primer_r TGGGGTCACTTGTTAGCTGTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name GeneBridge 4
Primer_f CTCGGGACATTTAGATACATC
Primer_r TGGGGTCACTTGTTAGCTGTC
PCR product length 162 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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