Gene/Protein Characteristic Table for KIAA0469
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Product ID ORK05763
Accession No AB007938
Description kelch-like family member 21
Clone name hg01666
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (6450 bp)
Predicted protein sequence (559 aa)
Source Human adult brain
Rouge ID mKIAA0469 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 6450 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Integrity of 3' end
Length of 3'UTR 4646 bp
Genome contig ID gi89161185r_6473366
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
ACTTTTTGCAATAAAAGTATTTCCTATCCATTTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTCATTGCCTTTGTCCTCCTGCTACTGTCTTCTGGGACTCTTGGGCTGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 6573366 6585648 3 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 559 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAI16082 0 99.8 kelch-like 21 (...
Homo sapiens
Q9UJP4 2.9e-214 99.8 Kelch-like prot...
Homo sapiens
BAG52104 1.1e-213 99.6 unnamed protein...
Homo sapiens
XP_001094118 1.1e-213 99.4 similar to kelc...
Macaca mulatta
XP_546754 4.5e-212 98.4 similar to kelc...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB032955 6e-39 30.6 KIAA1129
AB051474 6.1e-37 30.4 KIAA1687
AB040923 2.6e-35 28.8 KIAA1490
AB067508 9.7e-33 34.8 KIAA1921
AB037799 3.6e-30 27.1 KIAA1378
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013069 45 153 PF00651 BTB/POZ
IPR011705 158 259 PF07707 BTB/Kelch-associated
IPR006652 295 341 PF01344 Kelch repeat type 1
IPR006652 344 389 PF01344 Kelch repeat type 1
IPR006652 391 429 PF01344 Kelch repeat type 1
IPR006652 431 475 PF01344 Kelch repeat type 1
IPR006652 502 519 PF01344 Kelch repeat type 1
HMMSmart IPR000210 55 153 SM00225 BTB/POZ-like
IPR006652 307 354 SM00612 Kelch repeat type 1
IPR006652 356 402 SM00612 Kelch repeat type 1
IPR006652 403 442 SM00612 Kelch repeat type 1
ProfileScan IPR000210 55 123 PS50097 BTB/POZ-like
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f
Primer_r
PCR conditions °C sec °C sec cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f CTCTGGGGTGAACTGGATGTG
Primer_r ATAGATGTTGGGATGCCTGGG
PCR product length 202 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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