hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03563339/chunk_1/iprscan-20080502-03563339.nocrc
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Query sequence: KIAA0469
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00225                                                 106.0    4.4e-27   1
SM00612                                                  65.3    7.7e-15   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      55   153 ..     1   114 []   106.0  4.4e-27
SM00612      1/3     307   354 ..     1    55 []    11.7        1
SM00612      2/3     356   402 ..     1    55 []    38.8  7.3e-07
SM00612      3/3     403   442 ..     1    55 []    14.9     0.44

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 55 to 153: score 106.0, E = 4.4e-27
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       Dvtl + g        g+ f+a  H+avLaa    SpyF+a+f ++
    KIAA0469    55    LDVTLEAAG--------GRDFPA--HRAVLAAA---SPYFRAMFAGq 88   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++++ +++ l +      v p+ +++lL+f Yt+++ ++ +   n+e l
    KIAA0469    89 lresraerVRLHG------VPPDMLQLLLDFSYTgRVAVSGD---NAEPL 129  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L++Ad+l    q p ++e+C  fl+++l   
    KIAA0469   130 LRAADLL----QFPaVKEACGAFLQQQL    153  

SM00612: domain 1 of 3, from 307 to 354: score 11.7, E = 1
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       +  vGG+d        + + l +v++Y+p t++Wr ++  p    g
    KIAA0469   307    ILVLVGGCDQ-------DCDELVTVDCYNPQTGQWRYLAEFPDHLGG 346  

                   agvaving<-*
                     + v  g   
    KIAA0469   347 GYSIVALG    354  

SM00612: domain 2 of 3, from 356 to 402: score 38.8, E = 7.3e-07
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iYv+GG dg        ++  + v++Y+ + n+W +v++M  +R +
    KIAA0469   356    DIYVTGGSDG--------SRLYDCVWRYNSSVNEWAEVAPMLKAREY 394  

                   agvaving<-*
                   +++ v++g   
    KIAA0469   395 HSSSVLDG    402  

SM00612: domain 3 of 3, from 403 to 442: score 14.9, E = 0.44
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++Yvv               + +s+E+YD+ t+ W+ + +M++p  +
    KIAA0469   403    LLYVV---------------AADSTERYDHTTDSWEALQPMTYPMDN 434  

                   agvaving<-*
                   ++ +++ g   
    KIAA0469   435 CSTTACRG    442  

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