hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03563339/chunk_1/iprscan-20080502-03563339.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0469 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00651.21.ls BTB/POZ domain 144.2 3.1e-40 1 PF00651.21.fs BTB/POZ domain 142.5 1.1e-39 1 PF07707.5.ls BTB And C-terminal Kelch 131.1 2.9e-36 1 PF01344.15.fs Kelch motif 129.7 4.9e-36 5 PF01344.15.ls Kelch motif 129.7 7.4e-36 5 PF07707.5.fs BTB And C-terminal Kelch 129.1 1.1e-35 1 PF07646.5.ls Kelch motif 48.3 2.4e-11 5 PF07646.5.fs Kelch motif 44.7 2.7e-11 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 45 153 .. 1 135 [] 144.2 3.1e-40 PF00651.21.fs 1/1 45 153 .. 1 135 [] 142.5 1.1e-39 PF07707.5.fs 1/1 158 259 .. 1 103 [] 129.1 1.1e-35 PF07707.5.ls 1/1 158 259 .. 1 103 [] 131.1 2.9e-36 PF01344.15.ls 1/5 295 341 .. 1 45 [] 28.9 1.7e-05 PF01344.15.fs 1/5 295 341 .. 1 45 [] 26.9 8.4e-07 PF01344.15.fs 2/5 344 389 .. 1 45 [] 43.5 1.6e-11 PF01344.15.ls 2/5 344 389 .. 1 45 [] 45.5 1.7e-10 PF01344.15.fs 3/5 391 429 .. 1 45 [] 29.0 2.1e-07 PF01344.15.ls 3/5 391 429 .. 1 45 [] 30.8 4.3e-06 PF01344.15.ls 4/5 431 475 .. 1 45 [] 15.6 0.062 PF01344.15.ls 5/5 479 519 .. 1 45 [] 8.9 0.35 PF01344.15.fs 5/5 502 519 .. 28 45 .] 16.8 0.00061 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 45 to 153: score 144.2, E = 3.1e-40 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l +lr + ++ DVtL + + g+ f+AH+avLaa+SpYF+a+ KIAA0469 45 LSQLRAERKFLDVTLEAAG-------GRDFPAHRAVLAAASPYFRAM 84 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F gq++ e+ ++ ++ l +v+p+ +++lL+f Ytg++ ++ KIAA0469 85 FAGQLR----ESRAE---RVRLHGVPPDMLQLLLDFSYTGRVAVS----- 122 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +n+e lL+aA dllq p++++aC fl+++l KIAA0469 123 ------GDNAEPLLRAA-DLLQFPAVKEACGAFLQQQL 153 PF00651.21.fs: domain 1 of 1, from 45 to 153: score 142.5, E = 1.1e-39 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l +lr + ++ DVtL + + g+ f+AH+avLaa+SpYF+a+ KIAA0469 45 LSQLRAERKFLDVTLEAAG-------GRDFPAHRAVLAAASPYFRAM 84 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F gq++ e+ ++ ++ l +v+p+ +++lL+f Ytg++ ++ KIAA0469 85 FAGQLR----ESRAE---RVRLHGVPPDMLQLLLDFSYTGRVAVS----- 122 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +n+e lL+aA dllq p++++aC fl+++l KIAA0469 123 ------GDNAEPLLRAA-DLLQFPAVKEACGAFLQQQL 153 PF07707.5.fs: domain 1 of 1, from 158 to 259: score 129.1, E = 1.1e-35 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CL++++fA+a++c+ La aA+rfil++ e+ e +L++ +L+ KIAA0469 158 CLDMQDFAEAFSCSGLASAAQRFILRHVGELG-AEQLERLPLARLLR 203 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +L++D L+Vp+Ee +++ ++rWv+ d+++R h+p+LL++VRLp++ + y KIAA0469 204 YLRDDGLCVPKEEAAYQLALRWVRADPPRRAAHWPQLLEAVRLPFVRRFY 253 Llevve<-* Ll +ve KIAA0469 254 LLAHVE 259 PF07707.5.ls: domain 1 of 1, from 158 to 259: score 131.1, E = 2.9e-36 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CL++++fA+a++c+ La aA+rfil++ e+ e +L++ +L+ KIAA0469 158 CLDMQDFAEAFSCSGLASAAQRFILRHVGELG-AEQLERLPLARLLR 203 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +L++D L+Vp+Ee +++ ++rWv+ d+++R h+p+LL++VRLp++ + y KIAA0469 204 YLRDDGLCVPKEEAAYQLALRWVRADPPRRAAHWPQLLEAVRLPFVRRFY 253 Llevve<-* Ll +ve KIAA0469 254 LLAHVE 259 PF01344.15.ls: domain 1 of 5, from 295 to 341: score 28.9, E = 1.7e-05 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp + + ++ l + +GG+d + l +v++Y+p t++W++l++ p KIAA0469 295 RMRPRPSTGLAEILVLVGGCDQdcDELVTVDCYNPQTGQWRYLAEFP 341 <-* KIAA0469 - - PF01344.15.fs: domain 1 of 5, from 295 to 341: score 26.9, E = 8.4e-07 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp + + ++ l + +GG+d + l +v++Y+p t++W++l++ p KIAA0469 295 RMRPRPSTGLAEILVLVGGCDQdcDELVTVDCYNPQTGQWRYLAEFP 341 <-* KIAA0469 - - PF01344.15.fs: domain 2 of 5, from 344 to 389: score 43.5, E = 1.6e-11 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< g+++v+l++ iYv+GG+dg++ ++v++Y+ + n+W ++++m KIAA0469 344 LGGGYSIVALGNDIYVTGGSDGsRLYDCVWRYNSSVNEWAEVAPML 389 -* KIAA0469 - - PF01344.15.ls: domain 2 of 5, from 344 to 389: score 45.5, E = 1.7e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< g+++v+l++ iYv+GG+dg++ ++v++Y+ + n+W ++++m KIAA0469 344 LGGGYSIVALGNDIYVTGGSDGsRLYDCVWRYNSSVNEWAEVAPML 389 -* KIAA0469 - - PF01344.15.fs: domain 3 of 5, from 391 to 429: score 29.0, E = 2.1e-07 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +R ++++ vldg++Yv+ +s e+YD++t++W+ l +m+ KIAA0469 391 AREYHSSSVLDGLLYVVAA------DSTERYDHTTDSWEALQPMT 429 * KIAA0469 - - PF01344.15.ls: domain 3 of 5, from 391 to 429: score 30.8, E = 4.3e-06 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +R ++++ vldg++Yv+ +s e+YD++t++W+ l +m+ KIAA0469 391 AREYHSSSVLDGLLYVVAA------DSTERYDHTTDSWEALQPMT 429 * KIAA0469 - - PF01344.15.ls: domain 4 of 5, from 431 to 475: score 15.6, E = 0.062 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- p +++ +++ g++Y+iG g + +YDp+t+ W+ + + KIAA0469 431 PMDNCSTTACRGRLYAIGSLAGKETMVMQCYDPDTDLWSLVDCGQ 475 * KIAA0469 - - PF01344.15.ls: domain 5 of 5, from 479 to 519: score 8.9, E = 0.35 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- ++l+g++Y + +d+ + v+vY+p+ n+W k+psm+ KIAA0469 479 WSFAPKTATLNGLMYFV--RDD--SAEVDVYNPTRNEWDKIPSMN 519 * KIAA0469 - - PF01344.15.fs: domain 5 of 5, from 502 to 519: score 16.8, E = 0.00061 *->vevYDpetntWtklpsmp<-* v+vY+p+ n+W k+psm+ KIAA0469 502 VDVYNPTRNEWDKIPSMN 519 //