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Gene/Protein Characteristic Table for KIAA0390

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Product ID	ORK00527
Accession No	AB002388
Description	zinc finger protein 536
Clone name	hj00075
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4935 bp) Predicted protein sequence (1312 aa)
HaloTag ORF Clone	FHC00527
Flexi ORF Clone	FXC00527
Source	Human adult brain
Rouge ID	mKIAA0390 by Kazusa Mouse cDNA Project

Length: 4935 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1312 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR007087	765	786	PD000003	Zinc finger
HMMPfam	IPR007087	142	164	PF00096	Zinc finger
	IPR007087	170	192	PF00096	Zinc finger
	IPR007087	286	309	PF00096	Zinc finger
	IPR007087	312	335	PF00096	Zinc finger
	IPR007087	357	379	PF00096	Zinc finger
	IPR007087	385	407	PF00096	Zinc finger
	IPR007087	643	665	PF00096	Zinc finger
	IPR007087	763	785	PF00096	Zinc finger
	IPR007087	791	813	PF00096	Zinc finger
HMMSmart	IPR015880	142	164	SM00355	Zinc finger
	IPR015880	170	192	SM00355	Zinc finger
	IPR015880	286	309	SM00355	Zinc finger
	IPR015880	312	335	SM00355	Zinc finger
	IPR015880	357	379	SM00355	Zinc finger
	IPR015880	385	407	SM00355	Zinc finger
	IPR015880	643	665	SM00355	Zinc finger
	IPR015880	763	785	SM00355	Zinc finger
	IPR015880	791	813	SM00355	Zinc finger
	IPR015880	1013	1036	SM00355	Zinc finger
ProfileScan	IPR007087	142	169	PS50157	Zinc finger
	IPR007087	170	192	PS50157	Zinc finger
	IPR007087	286	314	PS50157	Zinc finger
	IPR007087	357	384	PS50157	Zinc finger
	IPR007087	385	412	PS50157	Zinc finger
	IPR007087	643	670	PS50157	Zinc finger
	IPR007087	763	790	PS50157	Zinc finger
	IPR007087	791	818	PS50157	Zinc finger
ScanRegExp	IPR007087	144	164	PS00028	Zinc finger
	IPR007087	288	309	PS00028	Zinc finger
	IPR007087	359	379	PS00028	Zinc finger
	IPR007087	386	407	PS00028	Zinc finger
	IPR007087	645	665	PS00028	Zinc finger
	IPR007087	765	785	PS00028	Zinc finger

RT-PCR

Experimental conditions

Chromosome No. 19
Experimental conditions

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