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Gene/Protein Characteristic Table for KIAA0364

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Product ID	ORK00518
Accession No	AB002362
Description	immunoglobulin superfamily, member 1, transcript variant 4
Clone name	hh00116
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5413 bp) Predicted protein sequence (1437 aa)
HaloTag ORF Clone	FHC00518
Flexi ORF Clone	FXC00518
Source	Human adult brain
Rouge ID	mKIAA0364 by Kazusa Mouse cDNA Project

Length: 5413 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis). Integrity of 3' end

Length: 1437 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013151	437	495	PF00047	Immunoglobulin
	IPR013151	535	587	PF00047	Immunoglobulin
	IPR013151	797	853	PF00047	Immunoglobulin
	IPR013151	893	952	PF00047	Immunoglobulin
	IPR013151	989	1045	PF00047	Immunoglobulin
	IPR013151	1181	1237	PF00047	Immunoglobulin
HMMSmart	IPR003599	144	224	SM00409	Immunoglobulin subtype
	IPR003599	238	323	SM00409	Immunoglobulin subtype
	IPR003598	244	307	SM00408	Immunoglobulin subtype 2
	IPR003599	334	418	SM00409	Immunoglobulin subtype
	IPR003599	429	516	SM00409	Immunoglobulin subtype
	IPR003598	435	500	SM00408	Immunoglobulin subtype 2
	IPR003599	527	600	SM00409	Immunoglobulin subtype
	IPR003598	533	592	SM00408	Immunoglobulin subtype 2
	IPR003599	789	874	SM00409	Immunoglobulin subtype
	IPR003598	795	858	SM00408	Immunoglobulin subtype 2
	IPR003599	885	970	SM00409	Immunoglobulin subtype
	IPR003598	891	959	SM00408	Immunoglobulin subtype 2
	IPR003599	981	1066	SM00409	Immunoglobulin subtype
	IPR003598	987	1051	SM00408	Immunoglobulin subtype 2
	IPR003599	1077	1162	SM00409	Immunoglobulin subtype
	IPR003598	1083	1146	SM00408	Immunoglobulin subtype 2
	IPR003599	1173	1258	SM00409	Immunoglobulin subtype
	IPR003598	1179	1242	SM00408	Immunoglobulin subtype 2
	IPR003599	1269	1348	SM00409	Immunoglobulin subtype
	IPR003598	1275	1334	SM00408	Immunoglobulin subtype 2
ProfileScan	IPR007110	139	207	PS50835	Immunoglobulin-like
	IPR007110	422	493	PS50835	Immunoglobulin-like
	IPR007110	520	585	PS50835	Immunoglobulin-like
	IPR007110	878	970	PS50835	Immunoglobulin-like
	IPR007110	974	1043	PS50835	Immunoglobulin-like
	IPR007110	1166	1235	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	620	EAIRLSLIMQLVALLLVVLWIR	641	PRIMARY	22
	2	662	TMLFIVTALLCCGLCNGVLIEE	683	PRIMARY	22
	3	1363	IVRSSLIVVVVVALGVVLAIEW	1384	PRIMARY	22

RT-PCR

Experimental conditions

Chromosome No. X
Experimental conditions

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