Gene/Protein Characteristic Table for KIAA0211
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Product ID ORK00460
Accession No D86966
Description zinc finger protein 592
Clone name ha02768
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (5086 bp)
Predicted protein sequence (1317 aa)
Flexi ORF Clone FXC00460
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0211 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5086 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 712 bp
Genome contig ID gi51511731f_82992584
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
CTCAGACTATATTTCAAATAAAAAATCTTCTCACC
Flanking genome sequence
(154948 - 154997)
----+----*----+----*----+----*----+----*----+----*
ATGCAGGTAGGCTCTTGTATTCCTCTCCAAGTGAGCCTGGCCCCACCCTA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 f 83092584 83147530 12 99.6 Perfect prediction
Features of the protein sequence
Description

Length: 1317 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001084237 0 97.6 zinc finger pro...
Macaca mulatta
AAH94688 0 100.0 Zinc finger pro...
Homo sapiens
Q92610 0 99.9 Zinc finger pro...
Homo sapiens
EAX01959 0 99.5 zinc finger pro...
Homo sapiens
XP_001916274 0 91.5 zinc finger pro...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB046849 8e-38 40.2 KIAA1629
AB037862 8e-13 36.1 KIAA1441
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR007087 942 965 PF00096 Zinc finger
IPR007087 1063 1086 PF00096 Zinc finger
IPR007087 1203 1226 PF00096 Zinc finger
HMMSmart IPR015880 637 662 SM00355 Zinc finger
IPR015880 665 689 SM00355 Zinc finger
IPR015880 761 781 SM00355 Zinc finger
IPR015880 790 812 SM00355 Zinc finger
IPR015880 818 842 SM00355 Zinc finger
IPR015880 849 872 SM00355 Zinc finger
IPR015880 877 900 SM00355 Zinc finger
IPR015880 942 965 SM00355 Zinc finger
IPR015880 1033 1056 SM00355 Zinc finger
IPR015880 1063 1086 SM00355 Zinc finger
IPR015880 1093 1119 SM00355 Zinc finger
IPR015880 1174 1196 SM00355 Zinc finger
IPR015880 1203 1226 SM00355 Zinc finger
ProfileScan IPR007087 637 662 PS50157 Zinc finger
IPR007087 790 817 PS50157 Zinc finger
IPR007087 942 970 PS50157 Zinc finger
IPR007087 1063 1091 PS50157 Zinc finger
ScanRegExp IPR007087 792 814 PS00028 Zinc finger
IPR007087 879 900 PS00028 Zinc finger
IPR007087 944 965 PS00028 Zinc finger
IPR007087 1035 1056 PS00028 Zinc finger
IPR007087 1065 1086 PS00028 Zinc finger
IPR007087 1205 1226 PS00028 Zinc finger
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 18
Experimental conditions
Panel name Genebridge 4
Primer_f AGCTCTGCCTAGTCTGGTTTG
Primer_r CAAATGGCACGAGAGCAGTAC
PCR product length 142 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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