Gene/Protein Characteristic Table for KIAA0120
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Product ID ORK00415
Accession No D21261
Description transgelin 2, transcript variant 2
Clone name ha01756
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (1360 bp)
Predicted protein sequence (219 aa)
Flexi ORF Clone FXC00415
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0120 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 1360 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 687 bp
Genome contig ID gi89161185r_158054527
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 1 r 158154527 158161908 5 99.3 Perfect prediction
Features of the protein sequence

Length: 219 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_852741 2.2e-84 98.6 similar to tran...
Canis lupus fam...
P37802 1.9e-81 100.0 Transgelin-2; S...
Homo sapiens
AAV38421 1.9e-81 100.0 transgelin 2 [s...
synthetic construct
AAH02616 5.5e-81 99.5 Transgelin 2 [H...
Homo sapiens
Q5E9F5 1.6e-80 99.0 Transgelin-2.
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR003247 79 123 PD001527 Calponin-like actin-binding subtype
FPrintScan IPR003096 23 37 PR00888 SM22/calponin
IPR003096 42 55 PR00888 SM22/calponin
IPR001061 54 73 PR00890 Transgelin (SM22-alpha)
IPR003096 72 87 PR00888 SM22/calponin
IPR001061 82 97 PR00890 Transgelin (SM22-alpha)
IPR001061 104 117 PR00890 Transgelin (SM22-alpha)
IPR003096 108 124 PR00888 SM22/calponin
IPR003096 124 139 PR00888 SM22/calponin
IPR001061 138 147 PR00890 Transgelin (SM22-alpha)
IPR003096 145 159 PR00888 SM22/calponin
IPR001061 155 174 PR00890 Transgelin (SM22-alpha)
IPR001061 181 193 PR00890 Transgelin (SM22-alpha)
IPR003096 182 195 PR00888 SM22/calponin
IPR003096 195 210 PR00888 SM22/calponin
HMMPfam IPR001715 45 157 PF00307 Calponin-like actin-binding
IPR000557 194 219 PF00402 Calponin repeat
HMMSmart IPR001715 46 152 SM00033 Calponin-like actin-binding
ProfileScan IPR001715 44 156 PS50021 Calponin-like actin-binding
IPR000557 194 219 PS51122 Calponin repeat
ScanRegExp IPR000557 194 213 PS01052 Calponin repeat
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 1
Experimental conditions
Panel name Stanford G3
PCR product length 233 (0.8k) bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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