hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17551984/chunk_1/iprscan-20080501-17551984.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0120 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00307.21.ls Calponin homology (CH) domain 98.8 1.5e-26 1 PF00307.21.fs Calponin homology (CH) domain 96.9 5.7e-26 1 PF00402.8.fs Calponin family repeat 51.5 1.1e-15 1 PF00402.8.ls Calponin family repeat 53.5 6.3e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00307.21.fs 1/1 45 157 .. 1 122 [] 96.9 5.7e-26 PF00307.21.ls 1/1 45 157 .. 1 122 [] 98.8 1.5e-26 PF00402.8.fs 1/1 194 219 .] 1 26 [] 51.5 1.1e-15 PF00402.8.ls 1/1 194 219 .] 1 26 [] 53.5 6.3e-13 Alignments of top-scoring domains: PF00307.21.fs: domain 1 of 1, from 45 to 157: score 96.9, E = 5.7e-26 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca e+ l++W+ ++++++g+ p++ ++ f+ wlkDG++Lc KIAA0120 45 DLEQILIQWITTQCRKDVGR-------PQPGRENFQNWLKDGTVLCE 84 LlnklrPglidkkkv..pslsrfdkleNlnlaldaaekeGlgiilvlidp L+n+l+P+ ++k+ + s+++f+++e ++++l+aae++G + ++++++ KIAA0120 85 LINALYPEGQAPVKKiqASTMAFKQMEQISQFLQAAERYGINT-TDIFQT 133 eDivegnpdPDeklvltllwqLirrfq<-* +D++eg++ + +v+++l++L + KIAA0120 134 VDLWEGKN---MACVQRTLMNLGGLAV 157 PF00307.21.ls: domain 1 of 1, from 45 to 157: score 98.8, E = 1.5e-26 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca e+ l++W+ ++++++g+ p++ ++ f+ wlkDG++Lc KIAA0120 45 DLEQILIQWITTQCRKDVGR-------PQPGRENFQNWLKDGTVLCE 84 LlnklrPglidkkkv..pslsrfdkleNlnlaldaaekeGlgiilvlidp L+n+l+P+ ++k+ + s+++f+++e ++++l+aae++G + ++++++ KIAA0120 85 LINALYPEGQAPVKKiqASTMAFKQMEQISQFLQAAERYGINT-TDIFQT 133 eDivegnpdPDeklvltllwqLirrfq<-* +D++eg++ + +v+++l++L + KIAA0120 134 VDLWEGKN---MACVQRTLMNLGGLAV 157 PF00402.8.fs: domain 1 of 1, from 194 to 219: score 51.5, E = 1.1e-15 *->iGLqmGtnKgAsqaGmtaYGtprrli<-* iGLqmGtn+gAsqaGmt+YG+pr+++ KIAA0120 194 IGLQMGTNRGASQAGMTGYGMPRQIL 219 PF00402.8.ls: domain 1 of 1, from 194 to 219: score 53.5, E = 6.3e-13 *->iGLqmGtnKgAsqaGmtaYGtprrli<-* iGLqmGtn+gAsqaGmt+YG+pr+++ KIAA0120 194 IGLQMGTNRGASQAGMTGYGMPRQIL 219 //