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Gene/Protein Characteristic Table for FLJ00376

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Product ID	ORK04280
Accession No	AK090455
Clone name	sh07947
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5749 bp) Predicted protein sequence (931 aa)
Source	Human spleen
Rouge ID	mFLJ00376 by Kazusa Mouse cDNA Project

Length: 5749 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 931 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR003962	450	460	PR00014	Fibronectin
	IPR003962	476	494	PR00014	Fibronectin
	IPR003962	494	508	PR00014	Fibronectin
HMMPfam	IPR007110	62	118	PF00047	Immunoglobulin-like
	IPR007110	154	210	PF00047	Immunoglobulin-like
	IPR003961	288	378	PF00041	Fibronectin
	IPR003961	423	510	PF00041	Fibronectin
	IPR003961	529	619	PF00041	Fibronectin
HMMSmart	IPR003599	54	132	SM00409	Immunoglobulin subtype
	IPR003598	60	123	SM00408	Immunoglobulin C-2 type
	IPR003599	145	226	SM00409	Immunoglobulin subtype
	IPR003598	152	215	SM00408	Immunoglobulin C-2 type
	IPR003961	289	375	SM00060	Fibronectin
	IPR003961	423	507	SM00060	Fibronectin
	IPR003961	529	616	SM00060	Fibronectin
ProfileScan	IPR007110	52	143	PS50835	Immunoglobulin-like
	IPR007110	140	226	PS50835	Immunoglobulin-like
ScanRegExp	IPR002052	861	867	PS00092	N-6 Adenine-specific DNA methylase
	IPR001128	867	876	PS00086	Cytochrome P450

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	672	YLIVGVVLGSIVLIIVTFIPFCL	694	PRIMARY	23

Experimental conditions

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