Gene/Protein Characteristic Table for FLJ00288
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Product ID ORK07062
Accession No AK131086
Clone name sh02579
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5561 bp)
Predicted protein sequence (217 aa)
Source Human spleen
Rouge ID mFLJ00288 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5561 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Features of the protein sequence
Description

Length: 217 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAC85136 2e-99 100.0 FLJ00288 protei...
Homo sapiens
EAW59875 3e-71 100.0 TBC1 domain fam...
Homo sapiens
AAC23434 3.1e-71 100.0 match to ESTs A...
Homo sapiens
EAW59871 3.1e-71 100.0 TBC1 domain fam...
Homo sapiens
XP_001138770 3.4e-71 100.0 TBC1 domain fam...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AK000006 7.8e-16 38.5 FLJ00006
AB028978 1.3e-14 34.0 KIAA1055
D13644 1.7e-14 36.9 KIAA0019
AB020689 3.1e-14 35.6 KIAA0882
AB029031 5e-14 37.2 KIAA1108
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000195 1 183 PF00566 RabGAP/TBC domain
HMMSmart IPR000195 1 189 SM00164 RabGAP/TBC domain
ProfileScan IPR000195 13 157 PS50086 RabGAP/TBC domain
Experimental conditions
Primer_f
Primer_r
PCR conditions test
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