CDC40 ORF clone pFN21AB9989

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Halotag ORF Clone pFN21AB9989

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Clone info.

Species

human

Clone Name

pFN21AB9989 Sequence (with vector) Restriction Map

Product ID

FHC03965

Flexi Clone PID

FXC03965

ORF Sequence

DNA sequence (1737 bp)
Protein sequence (579 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528038]

Gene

KIBB9989

Symbol

CDC40

Alias : EHB3, PCH15, PRP17, PRPF17

Description

cell division cycle 40

Original Clone ID

cs01689

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1737 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 579 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS5081.1 4.2e-169 100.0 CDC40 CCDS32157.1 8.2e-18 25.8 WDR25 CCDS6981.1 4.6e-15 27.8 WDR5 CCDS340.1 9.5e-13 26.4 SNRNP40 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR019781 279 317 PF00400 WD40 repeat IPR019781 323 360 PF00400 WD40 repeat IPR019781 374 404 PF00400 WD40 repeat IPR019781 409 446 PF00400 WD40 repeat IPR019781 513 536 PF00400 WD40 repeat IPR019781 544 579 PF00400 WD40 repeat HMMSmart IPR001680 277 317 SM00320 WD40 repeat IPR001680 321 360 SM00320 WD40 repeat IPR001680 363 404 SM00320 WD40 repeat IPR001680 407 446 SM00320 WD40 repeat IPR001680 452 489 SM00320 WD40 repeat IPR001680 495 536 SM00320 WD40 repeat IPR001680 539 579 SM00320 WD40 repeat ProfileScan IPR019782 284 318 PS50082 WD40 repeat 2 IPR017986 284 579 PS50294 WD40-repeat-containing domain IPR019782 328 369 PS50082 WD40 repeat 2 IPR019782 414 446 PS50082 WD40 repeat 2 IPR019782 514 545 PS50082 WD40 repeat 2 IPR019782 546 579 PS50082 WD40 repeat 2
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_056975 579 605585 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB9989 Download

>KIBB9989  1737 bp
ATGTCGGCTGCGATTGCAGCTCTGGCCGCTTCCTATGGTTCGGGTTCAGGGTCCGAATCG
GACTCGGACAGTGAGAGCAGTCGGTGTCCGCTGCCAGCCGCCGACTCCCTCATGCACTTG
ACTAAATCGCCTTCATCAAAGCCGTCTCTAGCAGTGGCAGTGGACTCGGCTCCGGAGGTG
GCAGTTAAGGAAGATTTGGAGACTGGAGTTCACCTTGACCCTGCCGTCAAAGAAGTTCAG
TATAATCCTACCTATGAGACCATGTTTGCTCCTGAGTTTGGACCAGAAAATCCCTTTAGG
ACACAGCAAATGGCTGCCCCTAGAAATATGCTTTCTGGATATGCCGAACCAGCTCATATC
AATGATTTCATGTTTGAGCAGCAAAGGAGAACTTTTGCAACATATGGTTATGCATTAGAC
CCTTCATTAGATAATCATCAAGTGTCTGCTAAATATATTGGTTCTGTAGAAGAAGCTGAA
AAAAATCAAGGTTTAACTGTATTTGAAACTGGTCAGAAGAAAACAGAAAAGAGGAAAAAG
TTTAAAGAAAATGATGCATCCAATATTGATGGTTTTTTGGGACCATGGGCAAAATATGTG
GATGAAAAAGATGTAGCCAAACCTTCAGAAGAAGAGCAAAAAGAATTGGATGAAATCACA
GCAAAGAGGCAGAAAAAAGGAAAACAGGAAGAAGAGAAACCTGGGGAGGAGAAGACAATC
TTACATGTTAAAGAAATGTATGACTATCAAGGCAGGTCCTATCTTCACATACCTCAGGAT
GTTGGTGTTAATCTACGGTCAACTATGCCACCTGAGAAGTGTTATCTTCCCAAAAAACAA
ATTCATGTGTGGTCTGGACACACAAAGGGCGTCAGTGCAGTCAGATTGTTTCCTCTCTCT
GGCCATTTATTGCTGTCTTGTTCCATGGACTGTAAAATTAAGCTATGGGAGGTTTATGGA
GAACGGCGCTGTCTGAGAACATTTATTGGTCACAGTAAGGCTGTTAGGGATATCTGCTTC
AATACTGCAGGAACACAGTTCCTCAGTGCAGCCTATGACAGGTATCTTAAGCTCTGGGAC
ACTGAGACAGGACAGTGTATATCAAGATTTACAAACCGAAAAGTACCTTATTGTGTCAAA
TTCAATCCTGATGAAGATAAGCAAAATCTCTTTGTGGCTGGGATGTCTGATAAGAAGATT
GTGCAATGGGACATTCGAAGTGGAGAAATTGTGCAGGAATATGATCGGCATTTGGGAGCT
GTCAACACCATTGTTTTTGTGGATGAGAATAGGAGATTTGTGAGCACATCTGATGATAAA
AGCCTAAGAGTTTGGGAATGGGATATCCCTGTGGATTTCAAGTACATAGCAGAACCCAGT
ATGCACTCAATGCCTGCAGTGACTTTGTCTCCAAATGGAAAATGGCTAGCATGCCAATCA
ATGGACAACCAAATCTTAATTTTTGGAGCACAGAACAGATTTAGATTAAATAAGAAAAAA
ATTTTTAAGGGCCATATGGTAGCAGGCTATGCTTGTCAGGTGGACTTTTCACCAGACATG
AGTTATGTGATTTCAGGAGATGGAAATGGAAAATTAAACATTTGGGACTGGAAGACCACA
AAACTCTACAGTCGATTTAAAGCTCATGATAAAGTGTGTATAGGTGCAGTGTGGCATCCT
CATGAAACTTCTAAGGTCATAACATGTGGTTGGGATGGTCTCATTAAATTGTGGGAT

ORF Protein

Cloned ORF protein sequence for pFN21AB9989 Download

>KIBB9989  579 aa
MSAAIAALAASYGSGSGSESDSDSESSRCPLPAADSLMHLTKSPSSKPSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB9989 Download

>pFN21AB9989  6442 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGTCGGCTGCGATTGCAGCTCTGGCCGCTTCCTA
TGGTTCGGGTTCAGGGTCCGAATCGGACTCGGACAGTGAGAGCAGTCGGTGTCCGCTGCC
AGCCGCCGACTCCCTCATGCACTTGACTAAATCGCCTTCATCAAAGCCGTCTCTAGCAGT
GGCAGTGGACTCGGCTCCGGAGGTGGCAGTTAAGGAAGATTTGGAGACTGGAGTTCACCT
TGACCCTGCCGTCAAAGAAGTTCAGTATAATCCTACCTATGAGACCATGTTTGCTCCTGA
GTTTGGACCAGAAAATCCCTTTAGGACACAGCAAATGGCTGCCCCTAGAAATATGCTTTC
TGGATATGCCGAACCAGCTCATATCAATGATTTCATGTTTGAGCAGCAAAGGAGAACTTT
TGCAACATATGGTTATGCATTAGACCCTTCATTAGATAATCATCAAGTGTCTGCTAAATA
TATTGGTTCTGTAGAAGAAGCTGAAAAAAATCAAGGTTTAACTGTATTTGAAACTGGTCA
GAAGAAAACAGAAAAGAGGAAAAAGTTTAAAGAAAATGATGCATCCAATATTGATGGTTT
TTTGGGACCATGGGCAAAATATGTGGATGAAAAAGATGTAGCCAAACCTTCAGAAGAAGA
GCAAAAAGAATTGGATGAAATCACAGCAAAGAGGCAGAAAAAAGGAAAACAGGAAGAAGA
GAAACCTGGGGAGGAGAAGACAATCTTACATGTTAAAGAAATGTATGACTATCAAGGCAG
GTCCTATCTTCACATACCTCAGGATGTTGGTGTTAATCTACGGTCAACTATGCCACCTGA
GAAGTGTTATCTTCCCAAAAAACAAATTCATGTGTGGTCTGGACACACAAAGGGCGTCAG
TGCAGTCAGATTGTTTCCTCTCTCTGGCCATTTATTGCTGTCTTGTTCCATGGACTGTAA
AATTAAGCTATGGGAGGTTTATGGAGAACGGCGCTGTCTGAGAACATTTATTGGTCACAG
TAAGGCTGTTAGGGATATCTGCTTCAATACTGCAGGAACACAGTTCCTCAGTGCAGCCTA
TGACAGGTATCTTAAGCTCTGGGACACTGAGACAGGACAGTGTATATCAAGATTTACAAA
CCGAAAAGTACCTTATTGTGTCAAATTCAATCCTGATGAAGATAAGCAAAATCTCTTTGT
GGCTGGGATGTCTGATAAGAAGATTGTGCAATGGGACATTCGAAGTGGAGAAATTGTGCA
GGAATATGATCGGCATTTGGGAGCTGTCAACACCATTGTTTTTGTGGATGAGAATAGGAG
ATTTGTGAGCACATCTGATGATAAAAGCCTAAGAGTTTGGGAATGGGATATCCCTGTGGA
TTTCAAGTACATAGCAGAACCCAGTATGCACTCAATGCCTGCAGTGACTTTGTCTCCAAA
TGGAAAATGGCTAGCATGCCAATCAATGGACAACCAAATCTTAATTTTTGGAGCACAGAA
CAGATTTAGATTAAATAAGAAAAAAATTTTTAAGGGCCATATGGTAGCAGGCTATGCTTG
TCAGGTGGACTTTTCACCAGACATGAGTTATGTGATTTCAGGAGATGGAAATGGAAAATT
AAACATTTGGGACTGGAAGACCACAAAACTCTACAGTCGATTTAAAGCTCATGATAAAGT
GTGTATAGGTGCAGTGTGGCATCCTCATGAAACTTCTAAGGTCATAACATGTGGTTGGGA
TGGTCTCATTAAATTGTGGGATGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCT
AGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTG
AGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGA
GCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAA
AAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGC
AATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATG
TGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGG
ATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGG
GGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGC
ACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAAT
ATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAG
AGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTT
CCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGT
GCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGC
CCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTA
TCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGAC
TTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAA
TTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACT
ATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGC
CTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACG
ATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTA
GCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTG
CGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGG
TCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATC
TACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGT
GCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTAT
CAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGA
ACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGT
TTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGT
GGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGC
GCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAA
GCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCT
CCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTA
ACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTG
GTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGC
CTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTA
CCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTG
GTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTT
TGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGG
TCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAA
CGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGG
ATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAA
TTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGC
TGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATC
CACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGT
CCGGCGTAGAGGATCGAGATCT